Annuaire IPHC

DSA | Spectrométrie de Masse BioOrganique (LSMBO) » Publications

Publications

2021

Bertile F, Habold C, Le Maho Y, Giroud S. 2021. Body Protein Sparing in Hibernators : A Source for Biomedical Innovation. Front Physiol 12:634953. https://doi.org/10.3389/fphys.2021.634953

Bragantini B, Charron C, Bourguet M, Paul A, Tiotiu D, Rothe B, Marty H, Terral G, Hessmann S, Decourty L, Chagot ME, Strub JM, Massenet S, Bertrand E, Quinternet M, Saveanu C, Cianferani S, Labialle S, Manival X, Charpentier B. 2021. The box C/D snoRNP assembly factor Bcd1 interacts with the histone chaperone Rtt106 and controls its transcription dependent activity. Nat Commun 12:1859. https://doi.org/10.1038/s41467-021-22077-4

Bons J, Husson G, Chion M, Bonnet M, Maumy-Bertrand M, Delalande F, Cianferani S, Bertrand F, Picard B, Carapito C. 2021. Combining label-free and label-based accurate quantifications with SWATH-MS : Comparison with SRM and PRM for the evaluation of bovine muscle type effects. Proteomics 21:e2000214. https://doi.org/10.1002/pmic.202000214

Bertile F, Plumel M, Maes P, Hirschler A, Challet E. 2021. Daytime Restricted Feeding Affects Day-Night Variations in Mouse Cerebellar Proteome. Front Mol Neurosci 14:613161. https://doi.org/10.3389/fnmol.2021.613161

Wagner-Rousset E, Colas O, Chenu S, Francois YN, Guillarme D, Cianferani S, Tsybin YO, Sjogren J, Delobel A, Beck A. 2021. Fast Afucosylation Profiling of Glycoengineered Antibody Subunits by Middle-Up Mass Spectrometry. Methods Mol Biol 2271:73-83. https://doi.org/10.1007/978-1-0716-1241-5_5

Erb S, Cianferani S, Marcoux J. 2021. Hands on Native Mass Spectrometry Analysis of Multi-protein Complexes. Methods Mol Biol 2247:173-191. https://doi.org/10.1007/978-1-0716-1126-5_10

Azevedo-Favory J, Gaspin C, Ayadi L, Montacie C, Marchand V, Jobet E, Rompais M, Carapito C, Motorin Y, Saez-Vasquez J. 2021. Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants. RNA Biol 1-18. https://doi.org/10.1080/15476286.2020.1869892

Delfosse V, Huet T, Harrus D, Granell M, Bourguet M, Gardia-Parege C, Chiavarina B, Grimaldi M, Le Mevel S, Blanc P, Huang D, Gruszczyk J, Demeneix B, Cianferani S, Fini JB, Balaguer P, Bourguet W. 2021. Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures. Proc Natl Acad Sci U S A 118 : https://doi.org/10.1073/pnas.2020551118

Lehot V, Kuhn I, Nothisen M, Erb S, Kolodych S, Cianferani S, Chaubet G, Wagner A. 2021. Non-specific interactions of antibody-oligonucleotide conjugates with living cells. Sci Rep 11:5881. https://doi.org/10.1038/s41598-021-85352-w

Pythoud N, Bons J, Mijola G, Beck A, Cianferani S, Carapito C. 2021. Optimized Sample Preparation and Data Processing of Data-Independent Acquisition Methods for the Robust Quantification of Trace-Level Host Cell Protein Impurities in Antibody Drug Products. J Proteome Res 20:923-931. https://doi.org/10.1021/acs.jproteome.0c00664

Launay K, Amalian JA, Laurent E, Oswald L, Al Ouahabi A, Burel A, Dufour F, Carapito C, Clement JL, Lutz JF, Charles L, Gigmes D. 2021. Precise Alkoxyamine Design to Enable Automated Tandem Mass Spectrometry Sequencing of Digital Poly(phosphodiester)s. Angew Chem Int Ed Engl 60:917-926. https://doi.org/10.1002/anie.202010171

Postic G, Andreani J, Marcoux J, Reys V, Guerois R, Rey J, Mouton-Barbosa E, Vandenbrouck Y, Cianferani S, Burlet-Schiltz O, Labesse G, Tuffery P. 2021. Proteo3Dnet : a web server for the integration of structural information with interactomics data. Nucleic Acids Res https://doi.org/10.1093/nar/gkab332

Dalzon B, Devcic J, Bons J, Torres A, Diemer H, Ravanel S, Collin-Faure V, Cianferani S, Carapito C, Rabilloud T. 2021. A proteomic view of cellular responses of macrophages to copper when added as ion or as copper-polyacrylate complex. J Proteomics 239:104178. https://doi.org/10.1016/j.jprot.2021.104178

Deffieu MS, Cesonyte I, Delalande F, Boncompain G, Dorobantu C, Song E, Lucansky V, Hirschler A, Cianferani S, Perez F, Carapito C, Gaudin R. 2021. Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway. Sci Adv 7 : https://doi.org/10.1126/sciadv.aba7803

Ghoroghi S, Mary B, Larnicol A, Asokan N, Klein A, Osmani N, Busnelli I, Delalande F, Paul N, Halary S, Gros F, Fouillen L, Haeberle AM, Royer C, Spiegelhalter C, Andre-Gregoire G, Mittelheisser V, Detappe A, Murphy K, Timpson P, Carapito R, Blot-Chabaud M, Gavard J, Carapito C, Vitale N, Lefebvre O, Goetz JG, Hyenne V. 2021. Ral GTPases promote breast cancer metastasis by controlling biogenesis and organ targeting of exosomes. Elife 10 : https://doi.org/10.7554/eLife.61539

Beinsteiner B, Markov GV, Erb S, Chebaro Y, McEwen AG, Cianferani S, Laudet V, Moras D, Billas IML. 2021. A structural signature motif enlightens the origin and diversification of nuclear receptors. PLoS Genet 17:e1009492. https://doi.org/10.1371/journal.pgen.1009492

Oerum S, Catala M, Bourguet M, Gilet L, Barraud P, Cianferani S, Condon C, Tisne C. 2021. Structural studies of RNase M5 reveal two-metal-ion supported two-step dsRNA cleavage for 5S rRNA maturation. RNA Biol 1-11. https://doi.org/10.1080/15476286.2021.1885896

Picini F, Schneider S, Gavat O, Vargas Jentzsch A, Tan J, Maaloum M, Strub JM, Tokunaga S, Lehn JM, Moulin E, Giuseppone N. 2021. Supramolecular Polymerization of Triarylamine-Based Macrocycles into Electroactive Nanotubes. J Am Chem Soc 143:6498-6504. https://doi.org/10.1021/jacs.1c00623

Schleiss C, Carapito R, Fornecker LM, Muller L, Paul N, Tahar O, Pichot A, Tavian M, Nicolae A, Miguet L, Mauvieux L, Herbrecht R, Cianferani S, Freund JN, Carapito C, Maumy-Bertrand M, Bahram S, Bertrand F, Vallat L. 2021. Temporal multiomic modeling reveals a B-cell receptor proliferative program in chronic lymphocytic leukemia. Leukemia 35:1463-1474. https://doi.org/10.1038/s41375-021-01221-5

2020

Ciudad S, Puig E, Botzanowski T, Meigooni M, Arango AS, Do J, Mayzel M, Bayoumi M, Chaignepain S, Maglia G, Cianferani S, Orekhov V, Tajkhorshid E, Bardiaux B, Carulla N. 2020. Abeta(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage. Nat Commun 11:3014. https://doi.org/10.1038/s41467-020-16566-1

Ibrahim M, Ayoub D, Wasselin T, Van Dorsselaer A, Le Maho Y, Raclot T, Bertile F. 2020. Alterations in rat adipose tissue transcriptome and proteome in response to prolonged fasting. Biological Chemistry 401:389-405.

Hernandez-Alba O, Ehkirch A, Beck A, Cianferani S. 2020. Analysis of ADCs by Native Mass Spectrometry. Methods Mol Biol 2078:197-211. https://doi.org/10.1007/978-1-4939-9929-3_13

Lacoux C, Wacheul L, Saraf K, Pythoud N, Huvelle E, Figaro S, Graille M, Carapito C, Lafontaine DLJ, Heurgue-Hamard V. 2020. The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis. Nucleic Acids Res 48:12310-12325. https://doi.org/10.1093/nar/gkaa972

Allison TM, Barran PE, Cianferani S, Degiacomi MT, Gabelica V, Grandori R, Marklund EG, Menneteau T, Migas LG, Politis A, Sharon M, Sobott F, Thalassinos K, Benesch JLP. 2020. Computational strategies and challenges for using native ion mobility mass spectrometry in biophysics and structural biology. Anal Chem https://doi.org/10.1021/acs.analchem.9b05791

Wagner E, Colas O, Chenu S, Goyon A, Murisier A, Cianferani S, Francois Y, Fekete S, Guillarme D, D’Atri V, Beck A. 2020. Determination of size variants by CE-SDS for approved therapeutic antibodies : Key implications of subclasses and light chain specificities. J Pharm Biomed Anal 184:113166. https://doi.org/10.1016/j.jpba.2020.113166

Wagner-Rousset E, Colas O, Francois YN, Heinisch S, Guillarme D, Cianferani S, Beck A. 2020. Drug Loading and Distribution of ADCs After Reduction or IdeS Digestion and Reduction. Methods Mol Biol 2078:187-195. https://doi.org/10.1007/978-1-4939-9929-3_12

Kenny HC, Tascher G, Ziemianin A, Rudwill F, Zahariev A, Chery I, Gauquelin-Koch G, Barielle MP, Heer M, Blanc S, O’Gorman DJ, Bertile F. 2020. Effectiveness of Resistive Vibration Exercise and Whey Protein Supplementation Plus Alkaline Salt on the Skeletal Muscle Proteome Following 21 Days of Bed Rest in Healthy Males. J Proteome Res 19:3438-3451. https://doi.org/10.1021/acs.jproteome.0c00256

Lefeuvre B, Cantero P, Ehret-Sabatier L, Lenormand C, Barthel C, Po C, Parveen N, Grillon A, Jaulhac B, Boulanger N. 2020. Effects of topical corticosteroids and lidocaine on Borrelia burgdorferi sensu lato in mouse skin : potential impact to human clinical trials. Sci Rep 10:10552. https://doi.org/10.1038/s41598-020-67440-5

Tessier R, Nandi RK, Dwyer BG, Abegg D, Sornay C, Ceballos J, Erb S, Cianferani S, Wagner A, Chaubet G, Adibekian A, Waser J. 2020. Ethynylation of Cysteine Residues : From Peptides to Proteins in Vitro and in Living Cells. Angew Chem Int Ed Engl 59:10961-10970. https://doi.org/10.1002/anie.202002626

Duivelshof BL, Desligniere E, Hernandez-Alba O, Ehkirch A, Toftevall H, Sjogren J, Cianferani S, Beck A, Guillarme D, D’Atri V. 2020. Glycan-Mediated Technology for Obtaining Homogeneous Site-Specific Conjugated Antibody-Drug Conjugates : Synthesis and Analytical Characterization by Using Complementary Middle-up LC/HRMS Analysis. Anal Chem 92:8170-8177. https://doi.org/10.1021/acs.analchem.0c00282

Laurens C, Parmar A, Murphy E, Carper D, Lair B, Maes P, Vion J, Boulet N, Fontaine C, Marques M, Larrouy D, Harant I, Thalamas C, Montastier E, Caspar-Bauguil S, Bourlier V, Tavernier G, Grolleau JL, Bouloumie A, Langin D, Viguerie N, Bertile F, Blanc S, de Glisezinski I, O’Gorman D, Moro C. 2020. Growth and differentiation factor 15 is secreted by skeletal muscle during exercise and promotes lipolysis in humans. JCI Insight 5 : https://doi.org/10.1172/jci.insight.131870

Farras M, Miret J, Camps M, Roman R, Martinez O, Pujol X, Erb S, Ehkirch A, Cianferani S, Casablancas A, Cairo JJ. 2020. Homogeneous antibody-drug conjugates : DAR 2 anti-HER2 obtained by conjugation on isolated light chain followed by mAb assembly. MAbs 12:1702262. https://doi.org/10.1080/19420862.2019.1702262

Torres A, Dalzon B, Collin-Faure V, Diemer H, Fenel D, Schoehn G, Cianferani S, Carriere M, Rabilloud T. 2020. How Reversible Are the Effects of Fumed Silica on Macrophages ? A Proteomics-Informed View. Nanomaterials (Basel) 10 : https://doi.org/10.3390/nano10101939

Nguyen A, Nguyen D, Phong Nguyen TX, Sebastiani M, Dorr S, Hernandez-Alba O, Debaene F, Cianferani S, Heine A, Klebe G, Reuter K. 2020. The Importance of Charge in Perturbing the Aromatic Glue Stabilizing the Protein-Protein Interface of Homodimeric tRNA-Guanine Transglycosylase. ACS Chem Biol 15:3021-3029. https://doi.org/10.1021/acschembio.0c00700

Sornay C, Hessmann S, Erb S, Dovgan I, Ehkirch A, Botzanowski T, Cianferani S, Wagner A, Chaubet G. 2020. Investigating Ugi / Passerini multicomponent reactions for the Site-Selective Conjugation of Native Trastuzumab. Chemistry https://doi.org/10.1002/chem.202002432

Dalzon B, Aude-Garcia C, Diemer H, Bons J, Marie-Desvergne C, Perard J, Dubosson M, Collin-Faure V, Carapito C, Sanglier-Cianferani S, Carriere M, Rabilloud T. 2020. The longer the worse : a combined proteomic and targeted study of the long-termversusshort-term effects of silver nanoparticles on macrophages. Environmental Science-Nano 7:2032-2046. https://doi.org/10.1039/c9en01329f

Luu BE, Lefai E, Giroud S, Swenson JE, Chazarin B, Gauquelin-Koch G, Arnemo JM, Evans AL, Bertile F, Storey KB. 2020. MicroRNAs facilitate skeletal muscle maintenance and metabolic suppression in hibernating brown bears. J Cell Physiol 235:3984-3993. https://doi.org/10.1002/jcp.29294

Botzanowski T, Hernandez-Alba O, Malissard M, Wagner-Rousset E, Desligniere E, Colas O, Haeuw JF, Beck A, Cianferani S. 2020. Middle Level IM-MS and CIU Experiments for Improved Therapeutic Immunoglobulin Subclass Fingerprinting. Anal Chem 92:8827-8835. https://doi.org/10.1021/acs.analchem.0c00293

Belorusova AY, Bourguet M, Hessmann S, Chalhoub S, Kieffer B, Cianferani S, Rochel N. 2020. Molecular determinants of MED1 interaction with the DNA bound VDR-RXR heterodimer. Nucleic Acids Res 48:11199-11213. https://doi.org/10.1093/nar/gkaa775

Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, Miao Z, Gross M, Tranchant T, Radosavljevic M, Paul N, Stemmelen T, Pitoiset F, Hirschler A, Nespola B, Molitor A, Rolli V, Pichot A, Faletti LE, Rinaldi B, Friant S, Mednikov M, Karauzum H, Aman MJ, Carapito C, Lengerke C, Ziaee V, Eyaid W, Ehl S, Alroqi F, Parvaneh N, Bahram S. 2020. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 217 : https://doi.org/10.1084/jem.20192275

Dovgan I, Ehkirch A, Lehot V, Kuhn I, Koniev O, Kolodych S, Hentz A, Ripoll M, Ursuegui S, Nothisen M, Cianferani S, Wagner A. 2020. On the use of DNA as a linker in antibody-drug conjugates : synthesis, stability and in vitro potency. Sci Rep 10:7691. https://doi.org/10.1038/s41598-020-64518-y

Charles L, Mondal T, Greff V, Razzini M, Monnier V, Burel A, Carapito C, Lutz JF. 2020. Optimal conditions for tandem mass spectrometric sequencing of information-containing nitrogen-substituted polyurethanes. Rapid Commun Mass Spectrom 34:e8815. https://doi.org/10.1002/rcm.8815

Perraud Q, Cantero P, Munier M, Hoegy F, Zill N, Gasser V, Mislin GLA, Ehret-Sabatier L, Schalk IJ. 2020. Phenotypic Adaptation of Pseudomonas aeruginosa in the Presence of Siderophore-Antibiotic Conjugates during Epithelial Cell Infection. Microorganisms 8 : https://doi.org/10.3390/microorganisms8111820

Perraud Q, Cantero P, Roche B, Gasser V, Normant VP, Kuhn L, Hammann P, Mislin GLA, Ehret-Sabatier L, Schalk IJ. 2020. Phenotypic Adaption of Pseudomonas aeruginosa by Hacking Siderophores Produced by Other Microorganisms. Mol Cell Proteomics 19:589-607. https://doi.org/10.1074/mcp.RA119.001829

Thompson D, Cognat V, Goodfellow M, Koechler S, Heintz D, Carapito C, Van Dorsselaer A, Mahmoud H, Sangal V, Ismail W. 2020. Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-Biodesulfurizing Rhodococcus Strain IGTS8. Front Microbiol 11:1417. https://doi.org/10.3389/fmicb.2020.01417

Postic G, Marcoux J, Reys V, Andreani J, Vandenbrouck Y, Bousquet MP, Mouton-Barbosa E, Cianferani S, Burlet-Schiltz O, Guerois R, Labesse G, Tuffery P. 2020. Probing Protein Interaction Networks by Combining MS-Based Proteomics and Structural Data Integration. J Proteome Res 19:2807-2820. https://doi.org/10.1021/acs.jproteome.0c00066

Bouyssie D, Hesse AM, Mouton-Barbosa E, Rompais M, Macron C, Carapito C, Gonzalez de Peredo A, Coute Y, Dupierris V, Burel A, Menetrey JP, Kalaitzakis A, Poisat J, Romdhani A, Burlet-Schiltz O, Cianferani S, Garin J, Bruley C. 2020. Proline : an efficient and user-friendly software suite for large-scale proteomics. Bioinformatics 36:3148-3155. https://doi.org/10.1093/bioinformatics/btaa118

Talagrand-Reboul E, Westermann B, Raess MA, Schnell G, Cantero P, Barthel C, Ehret-Sabatier L, Jaulhac B, Boulanger N. 2020. Proteomic as an Exploratory Approach to Develop Vaccines Against Tick-Borne Diseases Using Lyme Borreliosis as a Test Case. Vaccines (Basel) 8 : https://doi.org/10.3390/vaccines8030463

Bonnet M, Soulat J, Bons J, Leger S, De Koning L, Carapito C, Picard B. 2020. Quantification of biomarkers for beef meat qualities using a combination of Parallel Reaction Monitoring- and antibody-based proteomics. Food Chem 317:126376. https://doi.org/10.1016/j.foodchem.2020.126376

Bernard Q, Grillon A, Lenormand C, Ehret-Sabatier L, Boulanger N. 2020. Skin Interface, a Key Player for Borrelia Multiplication and Persistence in Lyme Borreliosis. Trends Parasitol 36:304-314. https://doi.org/10.1016/j.pt.2019.12.017

Allison TM, Barran PE, Benesch JLP, Cianferani S, Degiacomi MT, Gabelica V, Grandori R, Marklund EG, Menneteau T, Migas LG, Politis A, Sharon M, Sobott F, Thalassinos K. 2020. Software requirements for the analysis and interpretation of native ion mobility mass spectrometry data. Anal Chem https://doi.org/10.1021/acs.analchem.9b05792

Boyer C, Cussonneau L, Brun C, Deval C, Pais de Barros JP, Chanon S, Bernoud-Hubac N, Daira P, Evans AL, Arnemo JM, Swenson JE, Gauquelin-Koch G, Simon C, Blanc S, Combaret L, Bertile F, Lefai E. 2020. Specific shifts in the endocannabinoid system in hibernating brown bears. Front Zool 17:35. https://doi.org/10.1186/s12983-020-00380-y

Osz J, McEwen AG, Bourguet M, Przybilla F, Peluso-Iltis C, Poussin-Courmontagne P, Mely Y, Cianferani S, Jeffries CM, Svergun DI, Rochel N. 2020. Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR. Nucleic Acids Res 48:9969-9985. https://doi.org/10.1093/nar/gkaa697

Oerum S, Dendooven T, Catala M, Gilet L, Degut C, Trinquier A, Bourguet M, Barraud P, Cianferani S, Luisi BF, Condon C, Tisne C. 2020. Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs. Mol Cell 80:227-236 e225. https://doi.org/10.1016/j.molcel.2020.09.008

Spenle C, Loustau T, Murdamoothoo D, Erne W, Beghelli-de la Forest Divonne S, Veber R, Petti L, Bourdely P, Morgelin M, Brauchle EM, Cremel G, Randrianarisoa V, Camara A, Rekima S, Schaub S, Nouhen K, Imhof T, Hansen U, Paul N, Carapito R, Pythoud N, Hirschler A, Carapito C, Dumortier H, Mueller CG, Koch M, Schenke-Layland K, Kon S, Sudaka A, Anjuere F, Van Obberghen-Schilling E, Orend G. 2020. Tenascin-C Orchestrates an Immune-Suppressive Tumor Microenvironment in Oral Squamous Cell Carcinoma. Cancer Immunol Res https://doi.org/10.1158/2326-6066.CIR-20-0074

Humbert N, Kovalenko L, Saladini F, Giannini A, Pires M, Botzanowski T, Cherenok S, Boudier C, Sharma KK, Real E, Zaporozhets OA, Cianferani S, Seguin-Devaux C, Poggialini F, Botta M, Zazzi M, Kalchenko VI, Mori M, Mely Y. 2020. (Thia)calixarenephosphonic Acids as Potent Inhibitors of the Nucleic Acid Chaperone Activity of the HIV-1 Nucleocapsid Protein with a New Binding Mode and Multitarget Antiviral Activity. ACS Infect Dis 6:687-702. https://doi.org/10.1021/acsinfecdis.9b00290

Desligniere E, Ehkirch A, Botzanowski T, Beck A, Hernandez-Alba O, Cianferani S. 2020. Toward Automation of Collision-Induced Unfolding Experiments through Online Size Exclusion Chromatography Coupled to Native Mass Spectrometry. Anal Chem 92:12900-12908. https://doi.org/10.1021/acs.analchem.0c01426

Sabou M, Doderer-Lang C, Leyer C, Konjic A, Kubina S, Lennon S, Rohr O, Viville S, Cianferani S, Candolfi E, Pfaff AW, Brunet J. 2020. Toxoplasma gondii ROP16 kinase silences the cyclin B1 gene promoter by hijacking host cell UHRF1-dependent epigenetic pathways. Cell Mol Life Sci 77:2141-2156. https://doi.org/10.1007/s00018-019-03267-2

Ibrahim M, Wasselin T, Challet E, Van Dorsselaer A, Le Maho Y, Raclot T, Bertile F. 2020. Transcriptional Changes Involved in Atrophying Muscles during Prolonged Fasting in Rats. Int J Mol Sci 21 : https://doi.org/10.3390/ijms21175984

Chabrol E, Stojko J, Nicolas A, Botzanowski T, Fould B, Antoine M, Cianferani S, Ferry G, Boutin JA. 2020. VHH characterization.Recombinant VHHs : Production, characterization and affinity. Anal Biochem 589:113491. https://doi.org/10.1016/j.ab.2019.113491

2019

Tascher G, Gerbaix M, Maes P, Chazarin B, Ghislin S, Antropova E, Vassilieva G, Ouzren-Zarhloul N, Gauquelin-Koch G, Vico L, Frippiat JP, Bertile F. 2019. Analysis of femurs from mice embarked on board BION-M1 biosatellite reveals a decrease in immune cell development, including B cells, after 1 wk of recovery on Earth. FASEB J 33:3772-3783. https://doi.org/10.1096/fj.201801463R

Hernandez-Alba O, Houel S, Hessmann S, Erb S, Rabuka D, Huguet R, Josephs J, Beck A, Drake PM, Cianferani S. 2019. A Case Study to Identify the Drug Conjugation Site of a Site-Specific Antibody-Drug-Conjugate Using Middle-Down Mass Spectrometry. J Am Soc Mass Spectrom 30:2419-2429. https://doi.org/10.1007/s13361-019-02296-2

Plumel M, Dumont S, Maes P, Sandu C, Felder-Schmittbuhl MP, Challet E, Bertile F. 2019. Circadian Analysis of the Mouse Cerebellum Proteome. Int J Mol Sci 20 : https://doi.org/10.3390/ijms20081852

Bons J, Macron C, Aude-Garcia C, Vaca-Jacome SA, Rompais M, Cianferani S, Carapito C, Rabilloud T. 2019. A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level. Mol Cell Proteomics 18:1085-1095. https://doi.org/10.1074/mcp.RA118.001269

Weinsanto I, Mouheiche J, Laux-Biehlmann A, Delalande F, Marquette A, Chavant V, Gabel F, Cianferani S, Charlet A, Parat MO, Goumon Y. 2019. Corrigendum : Morphine Binds Creatine Kinase B and Inhibits Its Activity. Front Cell Neurosci 13:292. https://doi.org/10.3389/fncel.2019.00292

Beck A, D’Atri V, Ehkirch A, Fekete S, Hernandez-Alba O, Gahoual R, Leize-Wagner E, Francois Y, Guillarme D, Cianferani S. 2019. Cutting-edge multi-level analytical and structural characterization of antibody-drug conjugates : present and future. Expert Rev Proteomics 16:337-362. https://doi.org/10.1080/14789450.2019.1578215

Niazi AK, Bariat L, Riondet C, Carapito C, Mhamdi A, Noctor G, Reichheld JP. 2019. Cytosolic Isocitrate Dehydrogenase from Arabidopsis thaliana Is Regulated by Glutathionylation. Antioxidants (Basel) 8 : https://doi.org/10.3390/antiox8010016

Boeuf A, Schnell G, Bernard Q, Kern A, Westermann B, Ehret-Sabatier L, Grillon A, Schramm F, Jaulhac B, Boulanger N. 2019. Dissociating effect of salivary gland extract from Ixodes ricinus on human fibroblasts : Potential impact on Borrelia transmission. Ticks Tick Borne Dis 10:433-441. https://doi.org/10.1016/j.ttbdis.2018.12.005

Quque M, Benhaim-Delarbre M, Deneubourg JL, Sueur C, Criscuolo F, Bertile F. 2019. Division of labour in the black garden ant (Lasius niger) leads to three distinct proteomes. J Insect Physiol 117:103907. https://doi.org/10.1016/j.jinsphys.2019.103907

Strassel C, Magiera MM, Dupuis A, Batzenschlager M, Hovasse A, Pleines I, Gueguen P, Eckly A, Moog S, Mallo L, Kimmerlin Q, Chappaz S, Strub JM, Kathiresan N, de la Salle H, Van Dorsselaer A, Ferec C, Py JY, Gachet C, Schaeffer-Reiss C, Kile BT, Janke C, Lanza F. 2019. An essential role for alpha4A-tubulin in platelet biogenesis. Life Sci Alliance 2 : https://doi.org/10.26508/lsa.201900309

Tascher G, Burban A, Camus S, Plumel M, Chanon S, Le Guevel R, Shevchenko V, Van Dorsselaer A, Lefai E, Guguen-Guillouzo C, Bertile F. 2019. In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes. Cells 8 : https://doi.org/10.3390/cells8020192

Baxter PNW, Al Ouahabi A, Karmazin L, Varnek A, Strub JM, Cianferani S. 2019. An Investigation into the Stephens-Castro Synthesis of Dehydrotriaryl[12]annulenes : Factors Influencing the Cyclotrimerization. European Journal of Organic Chemistry 2019:6783-6795. https://doi.org/10.1002/ejoc.201901053

Chazarin B, Ziemianin A, Evans AL, Meugnier E, Loizon E, Chery I, Arnemo JM, Swenson JE, Gauquelin-Koch G, Simon C, Blanc S, Lefai E, Bertile F. 2019. Limited Oxidative Stress Favors Resistance to Skeletal Muscle Atrophy in Hibernating Brown Bears (Ursus Arctos). Antioxidants (Basel) 8 : https://doi.org/10.3390/antiox8090334

Giroud S, Chery I, Bertile F, Bertrand-Michel J, Tascher G, Gauquelin-Koch G, Arnemo JM, Swenson JE, Singh NJ, Lefai E, Evans AL, Simon C, Blanc S. 2019. Lipidomics Reveals Seasonal Shifts in a Large-Bodied Hibernator, the Brown Bear. Front Physiol 10:389. https://doi.org/10.3389/fphys.2019.00389

Chazarin B, Storey KB, Ziemianin A, Chanon S, Plumel M, Chery I, Durand C, Evans AL, Arnemo JM, Zedrosser A, Swenson JE, Gauquelin-Koch G, Simon C, Blanc S, Lefai E, Bertile F. 2019. Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscle. Front Zool 16:12. https://doi.org/10.1186/s12983-019-0312-2

Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianferani S, Carapito R, Carapito C. 2019. Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma. Sci Rep 9:895. https://doi.org/10.1038/s41598-018-37273-4

Sanchez CP, Moliner Cubel S, Nyboer B, Jankowska-Dollken M, Schaeffer-Reiss C, Ayoub D, Planelles G, Lanzer M. 2019. Phosphomimetic substitution at Ser-33 of the chloroquine resistance transporter PfCRT reconstitutes drug responses in Plasmodium falciparum. J Biol Chem 294:12766-12778. https://doi.org/10.1074/jbc.RA119.009464

Gervason S, Larkem D, Mansour AB, Botzanowski T, Muller CS, Pecqueur L, Le Pavec G, Delaunay-Moisan A, Brun O, Agramunt J, Grandas A, Fontecave M, Schunemann V, Cianferani S, Sizun C, Toledano MB, D’Autreaux B. 2019. Physiologically relevant reconstitution of iron-sulfur cluster biosynthesis uncovers persulfide-processing functions of ferredoxin-2 and frataxin. Nat Commun 10:3566. https://doi.org/10.1038/s41467-019-11470-9

Schneider F, Dureau AF, Helle S, Betscha C, Senger B, Cremel G, Boulmedais F, Strub JM, Corti A, Meyer N, Guillot M, Schaaf P, Metz-Boutigue MH. 2019. A Pilot Study on Continuous Infusion of 4% Albumin in Critically Ill Patients : Impact on Nosocomial Infection via a Reduction Mechanism for Oxidized Substrates. Crit Care Explor 1:e0044. https://doi.org/10.1097/CCE.0000000000000044

Dalzon B, Bons J, Diemer H, Collin-Faure V, Marie-Desvergne C, Dubosson M, Cianferani S, Carapito C, Rabilloud T. 2019. A Proteomic View of Cellular Responses to Anticancer Quinoline-Copper Complexes. Proteomes 7 : https://doi.org/10.3390/proteomes7020026

Rochel N, Krucker C, Coutos-Thevenot L, Osz J, Zhang R, Guyon E, Zita W, Vanthong S, Hernandez OA, Bourguet M, Badawy KA, Dufour F, Peluso-Iltis C, Heckler-Beji S, Dejaegere A, Kamoun A, de Reynies A, Neuzillet Y, Rebouissou S, Beraud C, Lang H, Massfelder T, Allory Y, Cianferani S, Stote RH, Radvanyi F, Bernard-Pierrot I. 2019. Recurrent activating mutations of PPARgamma associated with luminal bladder tumors. Nat Commun 10:253. https://doi.org/10.1038/s41467-018-08157-y

Hyenne V, Ghoroghi S, Collot M, Bons J, Follain G, Harlepp S, Mary B, Bauer J, Mercier L, Busnelli I, Lefebvre O, Fekonja N, Garcia-Leon MJ, Machado P, Delalande F, Lopez AA, Silva SG, Verweij FJ, van Niel G, Djouad F, Peinado H, Carapito C, Klymchenko AS, Goetz JG. 2019. Studying the Fate of Tumor Extracellular Vesicles at High Spatiotemporal Resolution Using the Zebrafish Embryo. Dev Cell 48:554-572 e557. https://doi.org/10.1016/j.devcel.2019.01.014

Groysbeck N, Stoessel A, Donzeau M, da Silva EC, Lehmann M, Strub JM, Cianferani S, Dembele K, Zuber G. 2019. Synthesis and biological evaluation of 2.4 nm thiolate-protected gold nanoparticles conjugated to Cetuximab for targeting glioblastoma cancer cells via the EGFR. Nanotechnology 30:184005. https://doi.org/10.1088/1361-6528/aaff0a

Muller L, Fornecker L, Cianferani S, Carapito C. 2019. Tube-Gel : A Fast and Effective Sample Preparation Method for High-Throughput Quantitative Proteomics. Methods Mol Biol 1959:123-127. https://doi.org/10.1007/978-1-4939-9164-8_8

Hartmann L, Botzanowski T, Galibert M, Jullian M, Chabrol E, Zeder-Lutz G, Kugler V, Stojko J, Strub JM, Ferry G, Frankiewicz L, Puget K, Wagner R, Cianferani S, Boutin JA. 2019. VHH characterization. Comparison of recombinant with chemically synthesized anti-HER2 VHH. Protein Sci 28:1865-1879. https://doi.org/10.1002/pro.3712

Ayala-Nunez NV, Follain G, Delalande F, Hirschler A, Partiot E, Hale GL, Bollweg BC, Roels J, Chazal M, Bakoa F, Carocci M, Bourdoulous S, Faklaris O, Zaki SR, Eckly A, Uring-Lambert B, Doussau F, Cianferani S, Carapito C, Jacobs FMJ, Jouvenet N, Goetz JG, Gaudin R. 2019. Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells. Nat Commun 10:4430. https://doi.org/10.1038/s41467-019-12408-x

2018

D’Atri V, Causon T, Hernandez-Alba O, Mutabazi A, Veuthey JL, Cianferani S, Guillarme D. 2018. Adding a new separation dimension to MS and LC-MS : What is the utility of ion mobility spectrometry ? J Sep Sci 41:20-67. https://doi.org/10.1002/jssc.201700919

Criscuolo F, Sorci G, Behaim-Delarbre M, Zahn S, Faivre B, Bertile F. 2018. Age-related response to an acute innate immune challenge in mice : proteomics reveals a telomere maintenance-related cost. Proc Biol Sci 285 : https://doi.org/10.1098/rspb.2018.1877

Dovgan I, Erb S, Hessmann S, Ursuegui S, Michel C, Muller C, Chaubet G, Cianférani S, Wagner A. 2018. Arginine-selective bioconjugation with 4-azidophenyl glyoxal : application to the single and dual functionalisation of native antibodies. Org Biomol Chem. in press :

Issa N, Guillaumot N, Lauret E, Matt N, Schaeffer-Reiss C, Van Dorsselaer A, Reichhart JM, Veillard F. 2018. The Circulating Protease Persephone Is an Immune Sensor for Microbial Proteolytic Activities Upstream of the Drosophila Toll Pathway. Mol Cell 69:539-550 e536. https://doi.org/10.1016/j.molcel.2018.01.029

Cavallo G, Poyer S, Amalian JA, Dufour F, Burel A, Carapito C, Charles L, Lutz JF. 2018. Cleavable Binary Dyads : Simplifying Data Extraction and Increasing Storage Density in Digital Polymers. Angew Chem Int Ed Engl 57:6266-6269. https://doi.org/10.1002/anie.201803027

Berthier A, Vinod M, Porez G, Steenackers A, Alexandre J, Yamakawa N, Gheeraert C, Ploton M, Marechal X, Dubois-Chevalier J, Hovasse A, Schaeffer-Reiss C, Cianferani S, Rolando C, Bray F, Duez H, Eeckhoute J, Lefebvre T, Staels B, Lefebvre P. 2018. Combinatorial regulation of hepatic cytoplasmic signaling and nuclear transcriptional events by the OGT/REV-ERBalpha complex. Proc Natl Acad Sci U S A 115:E11033-E11042. https://doi.org/10.1073/pnas.1805397115

Chopard C, Tong PBV, Toth P, Schatz M, Yezid H, Debaisieux S, Mettling C, Gross A, Pugniere M, Tu A, Strub JM, Mesnard JM, Vitale N, Beaumelle B. 2018. Cyclophilin A enables specific HIV-1 Tat palmitoylation and accumulation in uninfected cells. Nat Commun 9:2251. https://doi.org/10.1038/s41467-018-04674-y

Desplancq D, Groysbeck N, Chiper M, Weiss E, Frisch B, Strub JM, Cianferani S, Zafeiratos S, Moeglin E, Holy X, Favier AL, De Carlo S, Schultz P, Spehner D, Zuber G. 2018. Cytosolic Diffusion and Peptide-Assisted Nuclear Shuttling of Peptide-Substituted Circa 102 Gold Atom Nanoclusters in Living Cells. Acs Applied Nano Materials 1:4236-4246. https://doi.org/10.1021/acsanm.8b00988

Garcia L, Girod M, Rompais M, Dugourd P, Carapito C, Lemoine J. 2018. Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset. Anal Chem 90:3928-3935. https://doi.org/10.1021/acs.analchem.7b04821

Dartevelle P, Ehlinger C, Zaet A, Boehler C, Rabineau M, Westermann B, Strub JM, Cianferani S, Haikel Y, Metz-Boutigue MH, Marban C. 2018. D-Cateslytin : a new antifungal agent for the treatment of oral Candida albicans associated infections. Sci Rep 8:9235. https://doi.org/10.1038/s41598-018-27417-x

Henri J, Chagot M, Bourguet M, Abel Y, Terral G, Maurizy C, Aigueperse C, Georgescauld F, Vandermoere F, Saint-Fort R, Behm-Ansmant I, Charpentier B, Pradet-Balade B, Verheggen C, Bertrand E, Meyer P, Cianférani S, Manival X, Quinternet M. 2018. Deep Structural Analysis of RPAP3 and PIH1D1, Two Components of the HSP90 Co-chaperone R2TP Complex. Structure 26:1196-1209.e1198.

Husson G, Delangle A, O’Hara J, Cianferani S, Gervais A, Van Dorsselaer A, Bracewell D, Carapito C. 2018. Dual Data-Independent Acquisition Approach Combining Global HCP Profiling and Absolute Quantification of Key Impurities during Bioprocess Development. Anal Chem 90:1241-1247. https://doi.org/10.1021/acs.analchem.7b03965

Coulter ME, Dorobantu CM, Lodewijk GA, Delalande F, Cianferani S, Ganesh VS, Smith RS, Lim ET, Xu CS, Pang S, Wong ET, Lidov HGW, Calicchio ML, Yang E, Gonzalez DM, Schlaeger TM, Mochida GH, Hess H, Lee WA, Lehtinen MK, Kirchhausen T, Haussler D, Jacobs FMJ, Gaudin R, Walsh CA. 2018. The ESCRT-III Protein CHMP1A Mediates Secretion of Sonic Hedgehog on a Distinctive Subtype of Extracellular Vesicles. Cell Rep 24:973-986 e978. https://doi.org/10.1016/j.celrep.2018.06.100

van Tran N, Muller L, Ross R, Lestini R, Létoquart J, Ulryck N, Limbach P, de Crécy-Lagard V, Cianférani S, Graille M. 2018. Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes. Nucleic Acids Res. 46:8483-8499. .

Muller L, Fornecker L, Chion M, Van Dorsselaer A, Cianferani S, Rabilloud T, Carapito C. 2018. Extended investigation of tube-gel sample preparation : a versatile and simple choice for high throughput quantitative proteomics. Sci Rep 8:8260. https://doi.org/10.1038/s41598-018-26600-4

Salaam J, Tabti L, Bahamyirou S, Lecointre A, Hernandez-Alba O, Jeannin O, Camerel F, Cianferani S, Bentouhami E, Nonat AM, Charbonniere LJ. 2018. Formation of Mono- and Polynuclear Luminescent Lanthanide Complexes based on the Coordination of Preorganized Phosphonated Pyridines. Inorg Chem 57:6095-6106. https://doi.org/10.1021/acs.inorgchem.8b00666

Mons C, Botzanowski T, Nikolaev A, Hellwig P, Cianférani S, Lescop E, Bouton C, Golinelli-Cohen M. 2018. The H2O2-Resistant Fe-S Redox Switch MitoNEET Acts as a pH Sensor To Repair Stress-Damaged Fe-S Protein. Biochemistry 57:5616-5628. .

Behrens C, Biela I, Petiot-Bécard S, Botzanowski T, Cianférani S, Sager C, Klebe G, Heine A, Reuter K. 2018. Homodimer Architecture of QTRT2, the Noncatalytic Subunit of the Eukaryotic tRNA-Guanine Transglycosylase. Biochemistry 57:3953-3965.

Ehkirch A, Hernandez-Alba O, Colas O, Beck A, Guillarme D, Cianferani S. 2018. Hyphenation of size exclusion chromatography to native ion mobility mass spectrometry for the analytical characterization of therapeutic antibodies and related products. J Chromatogr B Analyt Technol Biomed Life Sci 1086:176-183. https://doi.org/10.1016/j.jchromb.2018.04.010

Weinsanto I, Mouheiche J, Laux-Biehlmann A, Delalande F, Marquette A, Chavant V, Gabel F, Cianferani S, Charlet A, Parat MO, Goumon Y. 2018. Morphine Binds Creatine Kinase B and Inhibits Its Activity. Front Cell Neurosci 12:464. https://doi.org/10.3389/fncel.2018.00464

Carapito R, Carapito C, Morlon A, Paul N, Vaca Jacome AS, Alsaleh G, Rolli V, Tahar O, Aouadi I, Rompais M, Delalande F, Pichot A, Georgel P, Messer L, Sibilia J, Cianferani S, Van Dorsselaer A, Bahram S. 2018. Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency. Ann Rheum Dis 77:1675-1687. https://doi.org/10.1136/annrheumdis-2018-213524

Hernandez-Alba O, Wagner-Rousset E, Beck A, Cianferani S. 2018. Native Mass Spectrometry, Ion Mobility, and Collision-Induced Unfolding for Conformational Characterization of IgG4 Monoclonal Antibodies. Anal Chem 90:8865-8872. https://doi.org/10.1021/acs.analchem.8b00912

Ehkirch A, Goyon A, Hernandez-Alba O, Rouviere F, D’Atri V, Dreyfus C, Haeuw JF, Diemer H, Beck A, Heinisch S, Guillarme D, Cianferani S. 2018. A Novel Online Four-Dimensional SECxSEC-IMxMS Methodology for Characterization of Monoclonal Antibody Size Variants. Anal Chem 90:13929-13937. https://doi.org/10.1021/acs.analchem.8b03333

Bibi-Triki S, Husson G, Maucourt B, Vuilleumier S, Carapito C, Bringel F. 2018. N-terminome and proteogenomic analysis of the Methylobacterium extorquens DM4 reference strain for dichloromethane utilization. J Proteomics 179:131-139. https://doi.org/10.1016/j.jprot.2018.03.012

Ploton M, Mazuy C, Gheeraert C, Dubois V, Berthier A, Dubois-Chevalier J, Marechal X, Bantubungi K, Diemer H, Cianferani S, Strub JM, Helleboid-Chapman A, Eeckhoute J, Staels B, Lefebvre P. 2018. The nuclear bile acid receptor FXR is a PKA- and FOXA2-sensitive activator of fasting hepatic gluconeogenesis. J Hepatol 69:1099-1109. https://doi.org/10.1016/j.jhep.2018.06.022

Ehkirch A, D’Atri V, Rouviere F, Hernandez-Alba O, Goyon A, Colas O, Sarrut M, Beck A, Guillarme D, Heinisch S, Cianferani S. 2018. An Online Four-Dimensional HICxSEC-IMxMS Methodology for Proof-of-Concept Characterization of Antibody Drug Conjugates. Anal Chem 90:1578-1586. https://doi.org/10.1021/acs.analchem.7b02110

Grzela R, Nusbaum J, Fieulaine S, Lavecchia F, Desmadril M, Nhiri N, Van Dorsselaer A, Cianferani S, Jacquet E, Meinnel T, Giglione C. 2018. Peptide deformylases from Vibrio parahaemolyticus phage and bacteria display similar deformylase activity and inhibitor binding clefts. Biochim Biophys Acta. 1866:348-355.

Chanon S, Chazarin B, Toubhans B, Durand C, Chery I, Robert M, Vieille-Marchiset A, Swenson JE, Zedrosser A, Evans AL, Brunberg S, Arnemo JM, Gauquelin-Koch G, Storey KB, Simon C, Blanc S, Bertile F, Lefai E. 2018. Proteolysis inhibition by hibernating bear serum leads to increased protein content in human muscle cells. Sci Rep 8:5525. https://doi.org/10.1038/s41598-018-23891-5

Prudent R, Demoncheaux N, Diemer H, Collin-Faure V, Kapur R, Paublant F, Lafanechère L, Cianférani S, Rabilloud T. 2018. A quantitative proteomic analysis of cofilin phosphorylation in myeloid cells and its modulation using the LIM kinase inhibitor Pyr1. PLoS One. 13:e0208979.

Koniev O, Dovgan I, Renoux B, Ehkirch A, Eberova J, Cianférani S, Kolodych S, Papot S, Wagner A. 2018. Reduction-rebridging strategy for the preparation of ADPN-based antibody-drug conjugates. Medchemcomm. 9:827-830.

Maurizy C, Quinternet M, Abel Y, Verheggen C, Santo P, Bourguet M, Paiva A, Bragantini B, Chagot M, Robert M, Abeza C, Fabre P, Fort P, Vandermoere F, Sousa P, Rain J, Charpentier B, Cianférani S, Bandeiras T, Pradet-Balade B, Manival X, Bertrand E. 2018. The RPAP3-Cterminal domain identifies R2TP-like quaternary chaperones. Nat Commun. 9:2093.

Giroud S, Evans AL, Chery I, Bertile F, Tascher G, Bertrand-Michel J, Gauquelin-Koch G, Arnemo JM, Swenson JE, Lefai E, Blanc S, Simon C. 2018. Seasonal changes in eicosanoid metabolism in the brown bear. Naturwissenschaften 105:58. https://doi.org/10.1007/s00114-018-1583-8

Weinsanto I, Laux-Biehlmann A, Mouheiche J, Maduna T, Delalande F, Chavant V, Gabel F, Darbon P, Charlet A, Poisbeau P, Lamshoft M, Van Dorsselaer A, Cianferani S, Parat MO, Goumon Y. 2018. Stable isotope-labelled morphine to study in vivo central and peripheral morphine glucuronidation and brain transport in tolerant mice. Br J Pharmacol 175:3844-3856. https://doi.org/10.1111/bph.14454

Mori M, Kovalenko L, Malancona S, Saladini F, De Forni D, Pires M, Humbert N, Real E, Botzanowski T, Cianférani S, Giannini A, Dasso Lang M, Cugia G, Poddesu B, Lori F, Zazzi M, Harper S, Summa V, Mely Y, Botta M. 2018. Structure-Based Identification of HIV-1 Nucleocapsid Protein Inhibitors Active against Wild-Type and Drug-Resistant HIV-1 Strains. ACS Chem Biol. 13:253-266.

Ehrmann F, Kalim J, Pfaffeneder T, Bernet B, Hohn C, Schäfer E, Botzanowski T, Cianférani S, Heine A, Reuter K, Diederich F, Klebe G. 2018. Swapping Interface Contacts in the Homodimeric tRNA Guanine Transglycosylase : An Option for Functional Regulation. Angew Chem Int Ed Engl. 57:10085-10090.

2017

Bourgeois G, Marcoux J, Saliou JM, Cianferani S, Graille M. 2017. Activation mode of the eukaryotic m2G10 tRNA methyltransferase Trm11 by its partner protein Trm112. Nucleic Acids Res. 45:1971-1982.

Dovgan I, Ursuegui S, Erb S, Michel C, Kolodych S, Cianférani S, Wagner A. 2017. Acyl Fluorides : Fast, Efficient, and Versatile Lysine-Based Protein Conjugation via Plug-and-Play Strategy. Bioconjug Chem. 28:1452-1457.

Roux A, Gillet R, Huclier-Markai S, Ehret-Sabatier L, Charbonniere LJ, Nonat AM. 2017. Bifunctional bispidine derivatives for copper-64 labelling and positron emission tomography. Org Biomol Chem 15:1475-1483. https://doi.org/10.1039/c6ob02712a

Vizcaino JA, Walzer M, Jimenez RC, Bittremieux W, Bouyssie D, Carapito C, Corrales F, Ferro M, Heck AJR, Horvatovich P, Hubalek M, Lane L, Laukens K, Levander F, Lisacek F, Novak P, Palmblad M, Piovesan D, Puhler A, Schwammle V, Valkenborg D, van Rijswijk M, Vondrasek J, Eisenacher M, Martens L, Kohlbacher O. 2017. A community proposal to integrate proteomics activities in ELIXIR. F1000Res 6 : https://doi.org/10.12688/f1000research.11751.1

Paleari R, Caruso D, Kaiser P, Arsene CG, Schaeffer-Reiss C, Van Dorsselaer A, Bisse E, Ospina M, De Jesus VR, Wild B, Mosca A, A IWGoSoH. 2017. Developing a reference system for the IFCC standardization of HbA2. Clin Chim Acta 467:21-26. https://doi.org/10.1016/j.cca.2016.05.023

Kolodych S, Michel C, Delacroix S, Koniev O, Ehkirch A, Eberova J, Cianférani S, Renoux B, Krezel W, Poinot P, Muller C, Papot S, Wagner A. 2017. Development and evaluation of β-galactosidase-sensitive antibody-drug conjugates. Eur J Med Chem. pii : S0223-5234(17)30611-6. doi : 10.1016/j.ejmech.2017.08.008. :

Wagner-Rousset E, Fekete S, Morel-Chevillet L, Colas O, Corvaïa N, Cianférani S, Guillarme D, Beck A. 2017. Development of a fast workflow to screen the charge variants of therapeutic antibodies. J Chromatogr A 1498:147-154.

Dalzon B, Aude-Garcia C, Collin-Faure V, Diemer H, Béal D, Dussert F, Fenel D, Schoehn G, Cianférani S, Carrière M, Rabilloud T. 2017. Differential proteomics highlights macrophage-specific responses to amorphous silica nanoparticles. Nanoscale 9:9641-9658.

Baxter PNW, Karmazin L, DeCian A, Varnek A, Gisselbrecht J-P, Strub J-M, Cianferani S. 2017. A Direct One-Pot Synthesis of Asymmetric Dehydrobenzopyrido-[12]annulenes and Their Physicochemical Properties. Eur. J. Org. Chem. 4625–4632.

Guéguéniat J, Dupin A, Stojko J, Beaurepaire L, Cianférani S, Mackereth C, Minvielle-Sébastia L, Fribourg S. 2017. Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3’-end processing. Nucleic Acids Res. 45:10115-10131.

Westermann B, Jacome ASV, Rompais M, Carapito C, Schaeffer-Reiss C. 2017. Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification. Methods Mol Biol 1574:77-90. https://doi.org/10.1007/978-1-4939-6850-3_6

Bouguenina H, Salaun D, Mangon A, Muller L, Baudelet E, Camoin L, Tachibana T, Cianférani S, Audebert S, Verdier-Pinard P, Badache A. 2017. EB1-binding-myomegalin protein complex promotes centrosomal microtubules functions. Proc Natl Acad Sci U S A. 114:E10687-E10696.

Terral G, Champion T, Debaene F, Colas O, Bourguet M, Wagner-Rousset E, Corvaia N, Beck A, Cianferani S. 2017. Epitope characterization of anti-JAM-A antibodies using orthogonal mass spectrometry and surface plasmon resonance approaches. MAbs. 9:1317-1326.

Gissot M, Hovasse A, Chaloin L, Schaeffer-Reiss C, Van Dorsselaer A, Tomavo S. 2017. An evolutionary conserved zinc finger protein is involved in Toxoplasma gondii mRNA nuclear export. Cell Microbiol 19 : https://doi.org/10.1111/cmi.12644

Lanshoeft C, Cianférani S, Heudi O. 2017. Generic Hybrid Ligand Binding Assay Liquid Chromatography High-Resolution Mass Spectrometry-Based Workflow for Multiplexed Human Immunoglobulin G1 Quantification at the Intact Protein Level : Application to Preclinical Pharmacokinetic Studies. Anal Chem. 89:2628-2635.

Bisse E, Schaeffer-Reiss C, Van Dorsselaer A, Alayi TD, Epting T, Winkler K, Benitez Cardenas AS, Soman J, Birukou I, Samuel PP, Olson JS. 2017. Hemoglobin Kirklareli (alpha H58L), a New Variant Associated with Iron Deficiency and Increased CO Binding. J Biol Chem 292:2542-2555. https://doi.org/10.1074/jbc.M116.764274

Grillon A, Westermann B, Cantero P, Jaulhac B, Voordouw MJ, Kapps D, Collin E, Barthel C, Ehret-Sabatier L, Boulanger N. 2017. Identification of Borrelia protein candidates in mouse skin for potential diagnosis of disseminated Lyme borreliosis. Sci Rep 7:16719. https://doi.org/10.1038/s41598-017-16749-9

Mohideen-Abdul K, Tazibt K, Bourguet M, Hazemann I, Lebars I, Takacs M, Cianférani S, Klaholz BP, Moras D, Billas IML. 2017. Importance of the Sequence-Directed DNA Shape for Specific Binding Site Recognition by the Estrogen-Related Receptor. Front. Endocrinol. 8:140.

Botzanowski T, Erb S, Hernandez-Alba O, Ehkirch A, Colas O, Wagner-Rousset E, Rabuka D, Beck A, Drake PM, Cianferani S. 2017. Insights from native mass spectrometry approaches for top- and middle- level characterization of site-specific antibody-drug conjugates. MAbs 9:801-811. https://doi.org/10.1080/19420862.2017.1316914

Kadek A, Kavan D, Marcoux J, Stojko J, Felice A, Cianférani S, Ludwig R, Halada P, Man P. 2017. Interdomain electron transfer in cellobiose dehydrogenase is governed by surface electrostatics. Biochim Biophys Acta. 1861:157-167.

Radu L, Schoenwetter E, Braun C, Marcoux J, Koelmel W, Schmitt D, Kuper J, Cianférani S, Egly J, Poterszman A, Kisker C. 2017. The intricate network between the p34 and p44 subunits is central to the activity of the transcription/DNA repair factor TFIIH. Nucleic Acids Res. 45:10872-10883.

Burel A, Carapito C, Lutz JF, Charles L. 2017. MS-DECODER : Milliseconds Sequencing of Coded Polymers. Macromolecules 50:8290-8296. https://doi.org/10.1021/acs.macromol.7b01737

Montacie C, Durut N, Opsomer A, Palm D, Comella P, Picart C, Carpentier MC, Pontvianne F, Carapito C, Schleiff E, Saez-Vasquez J. 2017. Nucleolar Proteome Analysis and Proteasomal Activity Assays Reveal a Link between Nucleolus and 26S Proteasome in A. thaliana. Front Plant Sci 8:1815. https://doi.org/10.3389/fpls.2017.01815

Tascher G, Brioche T, Maes P, Chopard A, O’Gorman D, Gauquelin-Koch G, Blanc S, Bertile F. 2017. Proteome-wide Adaptations of Mouse Skeletal Muscles during a Full Month in Space. J Proteome Res 16:2623-2638. https://doi.org/10.1021/acs.jproteome.7b00201

Lemaitre-Guillier C, Hovasse A, Schaeffer-Reiss C, Recorbet G, Poinssot B, Trouvelot S, Daire X, Adrian M, Heloir MC. 2017. Proteomics towards the understanding of elicitor induced resistance of grapevine against downy mildew. J Proteomics 156:113-125. https://doi.org/10.1016/j.jprot.2017.01.016

Licona C, Spaety ME, Capuozzo A, Ali M, Santamaria R, Armant O, Delalande F, Van Dorsselaer A, Cianferani S, Spencer J, Pfeffer M, Mellitzer G, Gaiddon C. 2017. A ruthenium anticancer compound interacts with histones and impacts differently on epigenetic and death pathways compared to cisplatin. Oncotarget 8:2568-2584. https://doi.org/10.18632/oncotarget.13711

Bertile F, Fouillen L, Wasselin T, Maes P, Le Maho Y, Van Dorsselaer A, Raclot T. 2017. The Safety Limits Of An Extended Fast : Lessons from a Non-Model Organism. Sci Rep. in press, doi : 10.1038/srep39008. :

Charbonnel C, Niazi AK, Elvira-Matelot E, Nowak E, Zytnicki M, de Bures A, Jobet E, Opsomer A, Shamandi N, Nowotny M, Carapito C, Reichheld JP, Vaucheret H, Saez-Vasquez J. 2017. The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain. Nucleic Acids Res 45:11891-11907. https://doi.org/10.1093/nar/gkx820

Ehrmann F, Stojko J, Metz A, Debaene F, Barandun L, Heine A, Diederich F, Cianférani S, Reuter K, Klebe G. 2017. Soaking suggests "alternative facts" : Only co-crystallization discloses major ligand-induced interface rearrangements of a homodimeric tRNA-binding protein indicating a novel mode-of-inhibition. PLoS One 12:e0175723. .

Stojko J, Dupin A, Chaignepain S, Beaurepaire L, Vallet-Courbin A, Van Dorsselaer A, Schmitter J-M, Minvielle-Sébastia L, Fribourg S, Cianférani S. 2017. Structural characterization of the yeast CF IA complex through a combination of mass spectrometry approaches. International Journal of Mass Spectrometry 420:57–66.

Cura V, Marechal N, Troffer-Charlier N, Strub JM, van Haren MJ, Martin NI, Cianferani S, Bonnefond L, Cavarelli J. 2017. Structural studies of protein arginine methyltransferase 2 reveal its interactions with potential substrates and inhibitors. Febs Journal 284:77-96. https://doi.org/10.1111/febs.13953

Carapito C, Kuhn L, Karim L, Rompais M, Rabilloud T, Schwenzer H, Sissler M. 2017. Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases. Methods 113:111-119. https://doi.org/10.1016/j.ymeth.2016.10.012

Carapito C, Duek P, Macron C, Seffals M, Rondel K, Delalande F, Lindskog C, Freour T, Vandenbrouck Y, Lane L, Pineau C. 2017. Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods. J Proteome Res 16:4340-4351. https://doi.org/10.1021/acs.jproteome.7b00374

Argemi X, Prevost G, Riegel P, Keller D, Meyer N, Baldeyrou M, Douiri N, Lefebvre N, Meghit K, Oustau CR, Christmann D, Cianferani S, Strub JM, Hansmann Y. 2017. VISLISI trial, a prospective clinical study allowing identification of a new metalloprotease and putative virulence factor from Staphylococcus lugdunensis. Clinical Microbiology and Infection 23 : https://doi.org/ARTN 334.e1
10.1016/j.cmi.2016.12.018

2016

Ramus C, Hovasse A, Marcellin M, Hesse A, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Van Dorssaeler A, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A. 2016. Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset. J Proteomics. 132:51–62.

Muller L, Fornecker L, Van Dorsselaer A, Cianférani S, Carapito C. 2016. Benchmarking sample preparation/digestion protocols reveals tube-gel being a fast and repeatable method for quantitative proteomics. Proteomics 16:2953-2961. .

Aude-Garcia C, Dalzon B, Ravanat JL, Collin-Faure V, Diemer H, Strub JM, Cianferani S, Van Dorsselaer A, Carrière M, Rabilloud T. 2016. A combined proteomic and targeted analysis unravels new toxic mechanisms for zinc oxide nanoparticles in macrophages. J Proteomics 134:174-185.

El Asmar Z, Terrand J, Jenty M, Host L, Mlih M, Zerr A, Justiniano H, Matz RL, Boudier C, Scholler E, Garnier JM, Bertaccini D, Thierse D, Schaeffer C, Van Dorsselaer A, Herz J, Bruban V, Boucher P. 2016. Convergent Signaling Pathways Controlled by LRP1 (Receptor-related Protein 1) Cytoplasmic and Extracellular Domains Limit Cellular Cholesterol Accumulation. J Biol Chem 291:5116-5127.

Dalzon B, Diemer H, Collin-Faure V, Cianférani S, Rabilloud T, Aude-Garcia C. 2016. Culture medium-associated changes in the core proteome of macrophages and in their responses to copper oxide nanoparticles. Proteomics 16:2864-2877.

Beck A, Terral G, Debaene F, Wagner-Rousset E, Marcoux J, Janin-Bussat M-C, Colas O, Van Dorsselaer A, Cianferani S. 2016. Cutting-Edge Mass Spectrometry methods for multi-level antibody-drug conjugates structural characterization. Expert Review of Proteomics 13:157-183.

Plumel M, Benhaim-Delarbre M, Rompais M, Thiersé D, Sorci G, van Dorsselaer A, Criscuolo F, Bertile F. 2016. Differential proteomics reveals age-dependent liver oxidative costs of innate immune activation in mice. J Proteomics. 181-190.

Lanshoeft C, Wolf T, Walles M, Barteau S, Picard F, Kretz O, Cianférani S, Heudi O. 2016. The flexibility of a generic LC-MS/MS method for the quantitative analysis of therapeutic proteins based on human immunoglobulin G and related constructs in animal studies. J Pharm Biomed Anal. 131:214-222.

Bragantini B, Tiotiu D, Rothé B, Saliou J, Marty H, Cianférani S, Charpentier B, Quinternet M, Manival X. 2016. Functional and Structural Insights of the Zinc-Finger HIT protein family members Involved in Box C/D snoRNP Biogenesis. J Mol Biol. 428:2488-2506. https://doi.org/10.1016/j.jmb.2016.04.028.

Ma S, Vigneron S, Robert P, Strub JM, Cianferani S, Castro A, Lorca T. 2016. Greatwall dephosphorylation and inactivation upon mitotic exit is triggered by PP1. J Cell Sci. 129:1329-1339.

Hovasse A, Alayi TD, Van Dorsselaer A, Marchal R, Jégou S, Schaeffer-Reiss C. 2016. In-depth glycoproteomic characterisation of grape berry vacuolar invertase using a combination of mass spectrometry-based approaches. Food Chemistry 200:237–244.

Terral G, Beck A, Cianférani S. 2016. Insights from native mass spectrometry and ion mobility-mass spectrometry for antibody and antibody-based product characterization. J Chromatogr B Analyt Technol Biomed Life Sci. 1032:79-90. https://doi.org/10.1016/j.jchromb.2016.03.044

Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse A, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C. 2016. Looking for Missing Proteins in the Proteome of Human Spermatozoa : An Update. J Proteome Res. 15:3998-4019.

Hammi I, Delalande F, Belkhou R, Marchioni E, Cianferani S, Ennahar S. 2016. Maltaricin CPN, a new class IIa bacteriocin produced by Carnobacterium maltaromaticum CPN isolated from mold ripened cheese. J Appl Microbiol. 121:1268-1274.

Frottin F, Bienvenut W, Bignon J, Jacquet E, Vaca Jacome A, Van Dorsselaer A, Cianferani S, Carapito C, Meinnel T, Giglione C. 2016. MetAP1 and MetAP2 drive cell selectivity for a potent anti-cancer agent in synergy, by controlling glutathione redox state. Oncotarget 7:63306-63323.

Armand L, Biola-Clier M, Bobyk L, Collin-Faure V, Diemer H, Strub J-M, Cianferani S, Van Dorsselaer A, Herlin-Boime N, Rabilloud T, Carriere M. 2016. Molecular responses of alveolar epithelial A549 cells to chronic exposure to titanium dioxide nanoparticles : A proteomic view. J Proteomics. 134:163-173.

Al-Shuaeeb R, Kolodych S, Koniev O, Delacroix S, Erb S, Nicolaÿ S, Cintrat J, Brion J, Cianférani S, Alami M, Wagner A, Messaoudi S. 2016. Palladium-Catalyzed Chemoselective and Biocompatible Functionalization of Cysteine-Containing Molecules at Room Temperature. Chemistry. 22:11365-11370. https://doi.org/10.1002/chem.201602277.

Rejón JD, Delalande F, Schaeffer-Reiss C, de Dios Alché J, Rodríguez-García MI, Van Dorsselaer A, Castro AJ. 2016. The Pollen Coat Proteome : At the Cutting Edge of Plant Reproduction. Proteomes 4 :

Soty M, Chilloux J, Delalande F, Zitoun C, Bertile F, Mithieux G, Gautier-Stein A. 2016. Post-Translational Regulation of the Glucose-6-Phosphatase Complex by Cyclic Adenosine Monophosphate Is a Crucial Determinant of Endogenous Glucose Production and Is Controlled by the Glucose-6-Phosphate Transporter. J. Proteome Res. 15:1342−1349.

Lederer M, Hahn U, Strub J, Cianférani S, Van Dorsselaer A, Nierengarten J, Torres T, Guldi D. 2016. Probing Supramolecular Interactions between a Crown Ether-Appended Zinc Phthalocyanine and an Ammonium Group Appended to a C60 Derivative. Chemistry 22:2051-2059.

Lanshoeft C, Heudi O, Cianférani S, Warren A, Picard F, Kretz O. 2016. Quantitative analysis of hIgG1 in monkey serum by LC-MS/MS using mass spectrometric immunoassay. Bioanalysis. 8:1035-1049. https://doi.org/10.4155/bio.16.32.

Lanshoeft C, Heudi O, Cianférani S. 2016. SMART Digest™ compared with pellet digestion for analysis of human immunoglobulin G1 in rat serum by liquid chromatography tandem mass spectrometry. Anal Biochem. 501:23-25.

Hovasse A, Bruneel O, Casiot C, Desoeuvre A, Farasin J, Hery M, Van Dorssaeler A, Carapito C, Arsene-Ploetze F. 2016. Spatio-temporal detection of the Thiomonas population and the Thiomonas arsenite oxidase involved in natural arsenite attenuation processes in the Carnoulès Acid Mine Drainage. Frontiers in Cell and Developmental Biology 4:3.

Souri N, Tian P, Lecointre A, Lemaire Z, Chafaa S, Strub J, Cianférani S, Elhabiri M, Platas-Iglesias C, Charbonnière L. 2016. Step by Step Assembly of Polynuclear Lanthanide Complexes with a Phosphonated Bipyridine Ligand. Inorg Chem. 55:12962-12974.

Thébault S, Agez M, Chi X, Stojko J, Cura V, Telerman SB, Maillet L, Gautier F, Billas-Massobrio I, Birck C, Troffer-Charlier N, Karafin T, Honoré J, Senff-Ribeiro A, Montessuit S, Johnson CM, Juin P, Cianférani S, Martinou JC, Andrews DW, Amson R, Telerman A, Cavarelli J. 2016. TCTP contains a BH3-like domain, which instead of inhibiting, activates Bcl-xL. Sci Rep. 6:19725.

Rhiel M, Bittl V, Tribensky A, Charnaud SC, Strecker M, Muller S, Lanzer M, Sanchez CJ, Schaeffer-Reiss C, Westermann B, Crabb BS, Gilson PR, Kulzer S, Przyborski JM. 2016. Trafficking of the exported P. falciparum chaperone PfHsp70x. Sci Rep 6:36174.

Carapito C, Kuhn L, Karim L, Rompais M, Rabilloud T, Schwenzer H, Sissler M. 2016. Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases. Methods. Oct 25. pii : S1046-2023(16)30401-7. doi : 10.1016/j.ymeth.2016.10.012 :

Sigwalt D, Caballero R, Holler M, Strub J-M, Van Dorsselaer A, Nierengarten J-F. 2016. Ultra-Fast Dendritic Growth Based on the Grafting of Fullerene Hexa-Adduct Macromonomers onto a Fullerene Core. Eur. J. Org. Chem. 2882–2887.

Sangaré LO, Alayi TD, Westermann B, Hovasse A, Sindikubwabo F, Callebaut I, Werkmeister E, Lafont F, Slomianny C, Hakimi MA, Van Dorsselaer A, Schaeffer-Reiss C, Tomavo S. 2016. Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection. Nat. Commun. 7:11191.

Lanshoeft C, Wolf T, Heudi O, Cianférani S, Barteau S, Walles M, Picard F, Kretz O. 2016. The use of generic surrogate peptides for the quantitative analysis of human immunoglobulin G1 in pre-clinical species with high-resolution mass spectrometry. Anal Bioanal Chem. 408:1687-1699.

Luche S, Eymard-Vernain E, Diemer H, Van Dorsselaer A, Rabilloud T, Lelong C. 2016. Zinc oxide induces the stringent response and major reorientations in the central metabolism of Bacillus subtilis. J Proteomics. 135:170-180. https://doi.org/10.1016/j.jprot.2015.07.018.

2015

Leveillard T, Van Dorsselaer A, Sahel JA. 2015. Altruisme dans la rétine : les bâtonnets nourrissent les cônes. Altruism in the retina : sticks feed cones. Medecine sciences 31:828-830.

Kolodych S, Koniev O, Baatarkhuu Z, Bonnefoy J, Debaene F, Cianférani S, Van Dorsselaer A, Wagner A. 2015. CBTF : New Amine-to-Thiol Coupling Reagent for Preparation of Antibody Conjugates with Increased Plasma Stability. Bioconjug Chem 26:197-200

Khammari I, Lakhal S, Westermann B, Benkahla A, Bouratbine A, Van Dorsselaer A, Ben Saïd M, Schaeffer-Reiss C, Saghrouni F. 2015. Characterization of Soluble and Membrane-Bound Proteins of Toxoplasma gondii as Diagnostic Markers of Infection. J Bacteriol Parasitol 6:239.

Ayoub D, Bertaccini D, Diemer H, Wagner-Rousset E, Colas O, Cianferani S, Van Dorsselaer A, Beck A, Schaeffer-Reiss C. 2015. Characterization of the N Terminal Heterogeneities of Monoclonal Antibodies Using In-Gel Charge Derivatization of α-Amines and LC-MS/MS. Anal Chem 87:3784-3790. .

Saliou J, Manival X, Tillault A, Atmanene C, Bobo C, Branlant C, Van Dorsselaer A, Charpentier B, Cianférani S. 2015. Combining native MS approaches to decipher archaeal box H/ACA ribonucleoprotein particle structure and activity. Proteomics 15:2851-2861.

Triboulet S, Aude-Garcia C, Armand L, Collin-Faure V, Chevallet M, Diemer H, Gerdil A, Proamer F, Strub J, Habert A, Herlin N, Van Dorsselaer A, Carrière M, Rabilloud T. 2015. Comparative proteomic analysis of the molecular responses of mouse macrophages to titanium dioxide and copper oxide nanoparticles unravels some toxic mechanisms for copper oxide nanoparticles in macrophages. PLoS One 10:e0124496.

Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y. 2015. Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins : Application to Chromosomes 2 and 14. J Proteome Res. 14:3621-3634.

Beck A, Debaene F, Diemer H, Wagner-Rousset E, Colas O, Van Dorsselaer A, Cianférani S. 2015. Cutting-edge mass spectrometry characterization of originator, biosimilar and biobetter antibodies. Journal of Mass Spectrometry 50:285–297.

Ethuin P, Marlard S, Delosiere M, Carapito C, Delalande F, Van Dorsselaer A, Dehaut A, Lencel V, Duflos G, Grard T. 2015. Differentiation between fresh and frozen–thawed sea bass
(Dicentrarchus labrax) fillets using two-dimensional gel electrophoresis. Food Chemistry 176:294-301.

Schnell G, Boeuf A, Westermann B, Jaulhac B, Lipsker D, Carapito C, Boulanger N, Ehret-Sabatier L. 2015. Discovery and targeted proteomics on cutaneous biopsies infected by borrelia to investigate lyme disease. Mol Cell Proteomics 14:1254-1264.

Bonnefond L, Stojko J, Mailliot J, Troffer-Charlier N, Cura V, Wurtz J-M, S. C, Cavarelli J. 2015. Functional insights from high resolution structures of mouse protein arginine methyltransferase 6. J Struct Biol. 191:175–183.

Beck A, S. C. 2015. Harness the benefits of mass spectrometry for in-depth ADC analytical characterization. LCGC, Advances in Biopharmaceutical Analysis October 2015:24-28.

Kern A, Schnell G, Bernard Q, Bœuf A, Jaulhac B, Collin E, Barthel C, Ehret-Sabatier L, Boulanger N. 2015. Heterogeneity of Borrelia burgdorferi Sensu Stricto Population and Its Involvement in Borrelia Pathogenicity : Study on Murine Model with Specific Emphasis on the Skin Interface. PLoS One. 10:e0133195.

Dorier M, Brun E, Veronesi G, Barreau F, Pernet-Gallay K, Desvergne C, Rabilloud T, Carapito C, Herlin-Boime N, Carrière M. 2015. Impact of anatase and rutile titanium dioxide nanoparticles on uptake carriers and efflux pumps in Caco-2 gut epithelial cells. Nanoscale 7:7352-7360.

Martinez-Zapien D, Saliou J, Han X, Atmanene C, Proux F, Cianférani S, Dock-Bregeon A. 2015. Intermolecular recognition of the non-coding RNA 7SK and HEXIM protein in perspective. Biochimie 117:63-71.

Stojko J, Fieulaine S, Petiot-Bécard S, Van Dorsselaer A, Meinnel T, Giglione C, Cianférani S. 2015. Ion mobility coupled to native mass spectrometry as a relevant tool to investigate extremely small ligand-induced conformational changes. Analyst 140:7234.

Koniev O, Kolodych S, Baatarkhuu Z, Stojko J, Eberova J, Bonnefoy J-Y, Cianférani S, Van Dorsselaer A, Wagner A. 2015. MAPN : First-in-Class Reagent for Kinetically Resolved Thiol-to-Thiol Conjugation. Bioconjug Chem. 26:1863-1867.

Marcoux J, Champion T, Colas O, Wagner-Rousset E, Corvaïa N, Van Dorsselaer A, Beck A, Cianférani S. 2015. Native mass spectrometry and ion mobility characterization of trastuzumab emtansine, a lysine-linked antibody drug conjugate. Protein Sci. 24:1210-1223.

Marcoux J MP, Porcari R, Degiacomi MT, Verona G, Taylor GW, Giorgetti S, Raimondi S, Sanglier-Cianférani S, Benesch JL, Cecconi C, Naqvi MM, Gillmore JD, Hawkins PN, Stoppini M, Robinson CV, Pepys MB, Bellotti V. 2015. A novel mechano-enzymatic cleavage mechanism underlies transthyretin amyloidogenesis. EMBO Mol Med. 7:1337-1349.

Vaca Jacome A-S, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A, Carapito C. 2015. N-terminome analysis of the human mitochondrial proteome. Proteomics. 15:2519-2524.

Schnell G, Boeuf A, Jaulhac B, Boulanger N, Collin E, Barthel C, De Martino S, Ehret-Sabatier L. 2015. Proteomic analysis of three Borrelia burgdorferi sensu lato native species and disseminating clones : Relevance for Lyme vaccine design. Proteomics 15:1280–1290.

Arsène-Ploetze F, Bertin PN, Carapito C. 2015. Proteomic tools to decipher microbial community structure and functioning. Environ Sci Pollut Res Int. 22:13599-13612.

Ait-Ali N, Fridlich R, Millet-Puel G, Clerin E, Delalande F, Jaillard C, Blond F, Perrocheau L, Reichman S, Byrne LC, Olivier-Bandini A, Bellalou J, Moyse E, Bouillaud F, Nicol X, Dalkara D, van Dorsselaer A, Sahel JA, Leveillard T. 2015. Rod-Derived Cone Viability Factor Promotes Cone Survival by Stimulating Aerobic Glycolysis. Cell 161:817-832. https://doi.org/S0092-8674(15)00310-4 [pii]
10.1016/j.cell.2015.03.023

Simonneau C, Leclercq B, Mougel A, Adriaenssens E, Paquet C, Raibaut L, Ollivier N, Drobecq H, Marcoux J, Cianferani S, Tulasne D, de Jonge H, Melnyk O, Vicogne J. 2015. Semi-synthesis of a HGF/SF kringle one (K1) domain scaffold generates a potent in vivo MET receptor agonist. Chem. Sci. 6:2110-2121

Ramus C, Hovasse A, Marcellin M, Hesse A, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Van Dorssaeler A, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A. 2015. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 6:286-294.

Quinternet M, Rothé B, Barbier M, Bobo C, Saliou J, Jacquemin C, Back R, Chagot M, S. C, Meyer P, Branlant C, Charpentier B, Manival X. 2015. Structure/Function Analysis of Protein-Protein Interactions Developed by the Yeast Pih1 Platform Protein and Its Partners in Box C/D snoRNP Assembly. J Mol Biol. 427:2816-2839.

Martin P, Dubois C, Jacquier E, Dion S, Mancini-Bourgine M, Godon O, Kratzer R, Lelu-Santolaria K, Evlachev A, Meritet J, Schlesinger Y, Villeval D, Strub J, Van Dorsselaer A, Marchand J, Geist M, Brandely R, Findel iA, Boukhebza H, Menguy T, Silvestre N, Michel M, Inchauspé G. 2015. TG1050, an immunotherapeutic to treat chronic hepatitis B, induces robust T cells and exerts an antiviral effect in HBV-persistent mice. Gut 64:1961-1971.

Marcoux J, Cianférani S. 2015. Towards integrative structural mass spectrometry : Benefits from hybrid approaches. Methods 89:4-12.

Jakobi S, Nguyen P, Debaene F, Cianférani S, Reuter K, Klebe G. 2015. What Glues a Homodimer Together : Systematic Analysis of the Stabilizing Effect of an Aromatic Hot Spot in the Protein-Protein Interface of the tRNA-modifying Enzyme Tgt. ACS Chem Biol. 10:1897-1907.

2014

Jemaa M, Morin N, Cavelier P, Cau J, Strub JM, Delsert C. 2014. Adult somatic progenitor cells and hematopoiesis in oysters. J Exp Biol 217:3067-3077. https://doi.org/10.1242/jeb.106575
jeb.106575 [pii]

Triboulet S, Aude-Garcia C, Armand L, Gerdil A, Diemer H, Proamer F, Collin-Faure V, Habert A, Strub J, Hanau D, Herlin N, Carrière M, Van Dorsselaer A, Rabilloud T. 2014. Analysis of cellular responses of macrophages to zinc ions and zinc oxide nanoparticles : a combined targeted and proteomic approach. Nanoscale 6:6102-6114. https://doi.org/10.1039/c4nr00319e

Juste C, Kreil DP, Beauvallet C, Guillot A, Vaca S, Carapito C, Mondot S, Sykacek P, Sokol H, Blon F, Lepercq P, Levenez F, Valot B, Carre W, Loux V, Pons N, David O, Schaeffer B, Lepage P, Martin P, Monnet V, Seksik P, Beaugerie L, Ehrlich SD, Gibrat JF, Van Dorsselaer A, Dore J. 2014. Bacterial protein signals are associated with Crohn’s disease. Gut 63:1566-1577. https://doi.org/10.1136/gutjnl-2012-303786
gutjnl-2012-303786 [pii]

Feve M, Saliou JM, Zeniou M, Lennon S, Carapito C, Dong J, Van Dorsselaer A, Junier MP, Chneiweiss H, Cianferani S, Haiech J, Kilhoffer MC. 2014. Comparative expression study of the endo-G protein coupled receptor (GPCR) repertoire in human glioblastoma cancer stem-like cells, U87-MG cells and non malignant cells of neural origin unveils new potential therapeutic targets. PLoS One 9:e91519. https://doi.org/10.1371/journal.pone.0091519
PONE-D-13-54333 [pii]

Voinot F, Fischer C, Schmidt C, Ehret-Sabatier L, Angel F. 2014. Controlled ingestion of kaolinite (5%) modulates enteric nitrergic innervation in rats. Fundam Clin Pharmacol 28:405-413. https://doi.org/10.1111/fcp.12040

Cotte V, Sabatier L, Schnell G, Carmi-Leroy A, Rousselle JC, Arsene-Ploetze F, Malandrin L, Sertour N, Namane A, Ferquel E, Choumet V. 2014. Differential expression of Ixodes ricinus salivary gland proteins in the presence of the Borrelia burgdorferi sensu lato complex. J Proteomics 96:29-43. https://doi.org/10.1016/j.jprot.2013.10.033
S1874-3919(13)00548-4 [pii]

Spagnolo A, Magnin-Robert M, Alayi TD, Cilindre C, Schaeffer-Reiss C, Van Dorsselaer A, Clement C, Larignon P, Ramirez-Suero M, Chong J, Bertsch C, Abou-Mansour E, Fontaine F. 2014. Differential responses of three grapevine cultivars to botryosphaeria dieback. Phytopathology 104:1021-1035. https://doi.org/10.1094/PHYTO-01-14-0007-R

Laux-Biehlmann A, Chung H, Mouheiche J, Veriepe J, Delalande F, Lamshoft M, Welters ID, Soldevila S, Bazin H, Lamarque L, Van Dorsselaer A, Poisbeau P, Schneider F, Goumon Y, Garnero P. 2014. Endogenous morphine-6-glucuronide (M6G) is present in the plasma of patients : Validation of a specific anti-M6G antibody for clinical and basic research BIOFACTORS 40:113-120.

Debeire P, Delalande F, Habrylo O, Jeltsch J, Van Dorsselaer A, Phalip V. 2014. Enzymatic cocktails produced by Fusarium graminearum under submerged fermentation using different lignocellulosic biomasses. FEMS Microbiology Letters 355:116-123.

Wasselin T, Zahn S, Le Maho Y, Van Dorsselaer A, Raclot T, Bertile F. 2014. Exacerbated oxidative stress in the fasting liver according to fuel partitioning. Proteomics 14:1905-1921.

Spagnolo A, Larignon P, Magnin-Robert M, Hovasse A, Cilindre C, Van Dorsselaer A, Clément C, Schaeffer-Reiss C, Fontaine F. 2014. Flowering as the Most Highly Sensitive Period of Grapevine
(Vitis vinifera L. cv Mourvèdre) to the Botryosphaeria Dieback
Agents Neofusicoccum parvum and Diplodia seriata Infection. Int. J. Mol. Sci. 2014:9644-9669. https://doi.org/10.3390/ijms15069644

Mori M, Nucci A, Lang MC, Humbert N, Boudier C, Debaene F, Sanglier-Cianferani S, Catala M, Schult-Dietrich P, Dietrich U, Tisne C, Mely Y, Botta M. 2014. Functional and Structural Characterization of 2-Amino-4-phenylthiazole Inhibitors of the HIV-1 Nucleocapsid Protein with Antiviral Activity. ACS Chem Biol 9:1950-1955. https://doi.org/10.1021/cb500316h

Hérissant L, Moehle E, Bertaccini D, Van Dorsselaer A, Schaeffer-Reiss C, Guthrie C, Dargemont C. 2014. H2B ubiquitylation modulates spliceosome assembly and function in budding yeast. Biol. Cell 106:126-136.

Alayi TD, Van Dorsselaer A, Epting T, Bissé E, Schaeffer-Reiss C. 2014. Hb A2-Konz [δ50(D1)Ser → Thr ; HBD : c.151T > A] : a New δ Chain Hemoglobin Variant Characterized by Mass Spectrometry and High Performance Liquid Chromatography. Hemoglobin 38:133-136.

Jakobi S, Nguyen TX, Debaene F, Metz A, Sanglier-Cianferani S, Reuter K, Klebe G. 2014. Hot-spot analysis to dissect the functional protein-protein interface of a tRNA-modifying enzyme. Proteins 82:2713-2732. https://doi.org/10.1002/prot.24637

Ranaei-Siadat E, Merigoux C, Seijo B, Ponchon L, Saliou JM, Bernauer J, Sanglier-Cianferani S, Dardel F, Vachette P, Nonin-Lecomte S. 2014. In vivo tmRNA protection by SmpB and pre-ribosome binding conformation in solution. RNA 20:1607-1620. https://doi.org/10.1261/rna.045674.114
rna.045674.114 [pii]

Debaene F, Boeuf A, Wagner-Rousset E, Colas O, Ayoub D, Corvaia N, Van Dorsselaer A, Beck A, Cianferani S. 2014. Innovative native MS methodologies for Antibody Drug Conjugate Characterization : high resolution native MS and IM-MS for average DAR and DAR distribution assessment. Anal Chem 86:10674−10683. https://doi.org/10.1021/ac502593n

Plumel MI, Stier A, Thiersé D, Van Dorsselaer A, Criscuolo F, Bertile F. 2014. Litter size manipulation in laboratory mice : an example of how proteomic analysis can uncover new mechanisms underlying the cost of reproduction. Frontiers in Zoology 11 :

Lien F, Berthier A, Bouchaert E, Gheeraert C, Alexandre J, Porez G, rawitt J, Dehondt H, Ploton M, Colin S, Lucas A, Patrice A, Pattou F, Diemer H, Van Dorsselaer A, Rachez C, Kamilic J, Groen AK, Staels B, Lefebvre P. 2014. Metformin interferes with bile acid homeostasis through AMPK-FXR crosstalk. J Clin Invest 124:10.1172/JCI68815.

Carapito C, Burel A, Guterl P, Walter A, Varrier F, Fabrice B, Van Dorsselaer A. 2014. MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing. Proteomics 14:1014-1019.

Abada S, Lecointre A, Christine C, Ehret-Sabatier L, Saupe F, Orend G, Brasse D, Ouadi A, Hussenet T, Laquerrière P, Elhabiri M, Charbonnière LJ. 2014. Phosphonated chelates for nuclear imaging. Org Biomol Chem. 12:9601-9620.

Rejon JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, de Dios Alche J, Isabel Rodriguez-Garcia M, Van Dorsselaer A, Castro AJ. 2014. The plant stigma exudate : a biochemically active extracellular environment for pollen germination ? Plant Signal Behav 9:e28274. https://doi.org/28274 [pii]

Moog C, Dereuddre-Bosquet N, Teillaud JL, Biedma ME, Holl V, Van Ham G, Heyndrickx L, Van Dorsselaer A, Katinger D, Vcelar B, Zolla-Pazner S, Mangeot I, Kelly C, Shattock RJ, Le Grand R. 2014. Protective effect of vaginal application of neutralizing and nonneutralizing inhibitory antibodies against vaginal SHIV challenge in macaques. Mucosal Immunol 7:46-56. https://doi.org/10.1038/mi.2013.23
mi201323 [pii]

Rothe B, Saliou JM, Quinternet M, Back R, Tiotiu D, Jacquemin C, Loegler C, Schlotter F, Pena V, Eckert K, Morera S, Dorsselaer AV, Branlant C, Massenet S, Sanglier-Cianferani S, Manival X, Charpentier B. 2014. Protein Hit1, a novel box C/D snoRNP assembly factor, controls cellular concentration of the scaffolding protein Rsa1 by direct interaction. Nucleic Acids Res 42:10731-10747. https://doi.org/10.1093/nar/gku612
gku612 [pii]

Magnin-Robert M, Spagnolo A, Alayi TD, Cilindre C, Mercier L, Schaeffer-Reiss C, Van Dorssaeler A, Clément C, Fontaine F. 2014. Proteomic insights into changes in grapevine wood in response to esca proper and apoplexy. Phytopathologia Mediterranea 53:168−187.

Cebron A, Arsene-Ploetze F, Bauda P, Bertin PN, Billard P, Carapito C, Devin S, Goulhen-Chollet F, Poirel J, Leyval C. 2014. Rapid impact of phenanthrene and arsenic on bacterial community structure and activities in sand batches. Microb Ecol 67:129-144. https://doi.org/10.1007/s00248-013-0313-1

Koniev O, Leriche G, Nothisen M, Remy JS, Strub JM, Schaeffer-Reiss C, Van Dorsselaer A, Baati R, Wagner A. 2014. Selective irreversible chemical tagging of cysteine with 3-arylpropiolonitriles. Bioconjug Chem 25:202-206. https://doi.org/10.1021/bc400469d

Liu T, Nonat A, Beyler M, Regueiro-Figueroa M, Nchimi Nono K, Jeannin O, Camerel F, Debaene F, Cianferani-Sanglier S, Tripier R, Platas-Iglesias C, Charbonniere LJ. 2014. Supramolecular luminescent lanthanide dimers for fluoride sequestering and sensing. Angew Chem Int Ed Engl 53:7259-7263. https://doi.org/10.1002/anie.201404847

Léveillard T, Frilich R, Clérin E, Ait-Ali N, Millet-Puel G, Jaillard C, Yang Y, Zack D, Van Dorsselaer A, Sahel J-A. 2014. Therapeutic strategy for handling inherited retinal degenarations in a gene-independent manner using rod-derived cone viability factors. C.R. Biologies 337:207-213.

Brun E, Barreau F, Veronesi G, Fayard B, Sorieul S, Chaneac C, Carapito C, Rabilloud T, Mabondzo A, Herlin-Boime N, Carriere M. 2014. Titanium dioxide nanoparticle impact and translocation through ex vivo, in vivo and in vitro gut epithelia. Part Fibre Toxicol 11:13. https://doi.org/10.1186/1743-8977-11-13
1743-8977-11-13 [pii]

2013

Nchimi-Nono K, Wegner KD, Linden S, Lecointre A, Ehret-Sabatier L, Shakir S, Hildebrandt N, Charbonniere LJ. 2013. Activated phosphonated trifunctional chelates for highly sensitive lanthanide-based FRET immunoassays applied to total prostate specific antigen detection. Org Biomol Chem 11:6493-6501. https://doi.org/10.1039/c3ob40898a

Aslam R, Laventie B, Marban C, Prévost G, Keller D, Strub J, Van Dorsselaer A, Haikel Y, Taddei C, Metz-Boutigue M. 2013. Activation of neutrophils by the two-component leukotoxin LukE/D from Staphylococcus aureus : proteomic analysis of the secretions. J Proteome Res. 12:3667-3678. .

Beck A, Diemer H, Ayoub D, Debaene F, Wagner-Rousset E, Carapito C, Van Dorsselaer A, Sanglier-Cianferani S. 2013. Analytical characterization of biosimilar antibodies and Fc-fusion proteins. Trends in Analytical Chemistry 48:81-95.

Mialoundama AS, Jadid N, Brunel J, Di Pascoli T, Heintz D, Erhardt M, Mutterer J, Bergdoll M, Ayoub D, Van Dorsselaer A, Rahier A, Nkeng P, Geoffroy P, Miesch M, Camara B, Bouvier F. 2013. Arabidopsis ERG28 Tethers the Sterol C4-Demethylation Complex to Prevent Accumulation of a Biosynthetic Intermediate That Interferes with Polar Auxin Transport. Plant Cell 25:4879-4893

Aslam R, Marban C, Corazzol C, Jehl F, Delalande F, Van Dorsselaer A, Prévost G, Haïkel Y, Taddei C, Schneider F, Metz-Boutigue M. 2013. Cateslytin, a chromogranin A derived peptide is active against Staphylococcus aureus and resistant to degradation by its proteases. PLoS One 8:e68993.

Miguet L, Lennon S, Baseggio L, Traverse-Glehen A, Berger F, Perrusson N, Chenard M, Galoisy A, Eischen A, Mayeur-Rousse C, Maar A, Fornecker L, Herbrecht R, Felman P, Van Dorsselaer A, Carapito C, Cianférani S, Mauvieux L. 2013. Cell-surface expression of the TLR homolog CD180 in circulating cells from splenic and nodal marginal zone lymphomas. Leukemia 27:1748-1750.

Beck A, Wagner-Rousset E, Ayoub D, Van Dorsselaer A, Sanglier-Cianferani S. 2013. Characterization of therapeutic antibodies and related products. Anal Chem 85:715-736. https://doi.org/10.1021/ac3032355

Bertaccini D, Vaca S, Carapito C, Arsène-Ploetze F, Van Dorsselaer A, Schaeffer-Reiss C. 2013. An Improved Stable Isotope N-Terminal Labeling Approach with Light/Heavy TMPP To Automate Proteogenomics Data Validation : dN-TOP. J Proteom Res 12:3063-3070. https://doi.org/10.1021/pr4002993

Immekus F, Barandun LJ, Betz M, Debaene F, Petiot S, Sanglier-Cianferani S, Reuter K, Diederich F, Klebe G. 2013. Launching Spiking Ligands into a Protein-Protein Interface : A Promising Strategy To Destabilize and Break Interface Formation in a tRNA Modifying Enzyme. ACS Chem Biol 2013:1163−1178. https://doi.org/dx.doi.org/10.1021/cb400020b

Plumel M, Wasselin T, Plot V, Strub J-M, Van Dorsselaer A, Carapito C, Georges J-Y, Bertile F. 2013. Mass spectrometry-based sequencing and SRM-based quantitation of two novel vitellogenin isoforms in the leatherback sea turtle Dermochelys coriacea. J Proteom Res 12:4122-4135. https://doi.org/10.1021/pr400444m

Triboulet S, Aude-Garcia C, Carriere M, Diemer H, Proamer F, Habert A, Chevallet M, Collin-Faure V, Strub J, Hanau D, Van Dorsselaer A, Herlin-Boime N, Rabilloud T. 2013. Molecular responses of mouse macrophages to copper and copper oxide nanoparticles inferred from proteomic analyses. Mol Cell Proteomics 12:3108-3122. https://doi.org/10.1074/mcp.M113.030742

Wagner-Rousset E, Schaeffer-Reiss C, Bednarczyk A, Corvaïa N, Van Dorsselaer A, Beck A. 2013. NanoLC Chips MS/MS for the characterization of N-glycopeptides generated from trypsin digestion of a monoclonal antibody. Methods Mol Biol. 988:81-91. https://doi.org/10.1007/978-1-62703-327-5_6.

Atmanene C, Wagner-Rousset E, Corvaïa N, Van Dorsselaer A, Beck A, Sanglier-Cianférani S. 2013. Noncovalent mass spectrometry for the characterization of antibody/antigen complexes. Methods Mol Biol. 988:243-268. https://doi.org/10.1007/978-1-62703-327-5_16.

Laventie BJ, Potrich C, Atmanène C, Saleh M, Jouber tO, Viero G, Bachmeyer C, Antonini V, Mancini I, Cianferani-Sanglier S, Keller D, Colin DA, Bourcier T, Anderluh G, van Dorsselaer A, Dalla Serra, Prévost G. 2013. para-sulfonato-calix[n]arenes inhibit staphylococcal bicomponent leukotoxins by supramolecular interactions. Biochem J. 450:559-571. https://doi.org/10.1042/BJ20121628

Pierrat P, Lebeau L, Creusat G, Wehrung P, Strub J-M, Van Dorsselaer A, Pons F, Zuber G, Lebeau L. 2013. Phospholipid-detergent conjugates as new tools for siRNA delivery. Chemistry - A European Journal 19:2344-2355. https://doi.org/10.1002/chem.201203071

Yang ZB, Eticha D, Führs H, Heintz D, Ayoub D, Van Dorsselaer A, Schlingmann B, Rao IM, Braun HP, Horst WJ. 2013. Proteomic and phosphoproteomic analysis of polyethylene glycol-induced osmotic stress in root tips of common bean (Phaseolus vulgaris L.). J Exp Bot 64:5569-5586.

Rejon JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, de Dios Alche J, Rodriguez-Garcia MI, Van Dorsselaer A, Castro AJ. 2013. Proteomics profiling reveals novel proteins and functions of the plant stigma exudate. J Exp Bot 64:5695-5705. https://doi.org/10.1093/jxb/ert345
ert345 [pii]

Gillet FX, Cattoni DI, Petiot-Becard S, Delalande F, Poignavent V, Brizard JP, Bessin Y, Van Dorsselaer A, Declerck N, Sanglier-Cianferani S, Brugidou C, Vignols F. 2013. The RYMV-Encoded Viral Suppressor of RNA Silencing P1 Is a Zinc-Binding Protein with Redox-Dependent Flexibility. Journal of Molecular Biology 425:2423-2435. https://doi.org/10.1016/j.jmb.2013.03.028

Prakasam T, Lusi M, Elhabiri M, Platas-Iglesias C, Olsen JC, Asfari Z, Cianférani-Sanglier S, Debaene F, Charbonnière LJ, Trabolsi A. 2013. Simultaneous Self-Assembly of a [2]Catenane, a Trefoil Knot, and a Solomon Link from a Simple Pair of Ligands. Angew Chem Int Ed Engl. 52:1-6.

Debaene F, Wagner-Rousset E, Colas O, Ayoub D, Corvaïa N, Van Dorsselaer A, Beck A, Sanglier-Cianférani S. 2013. Time Resolved Native Ion-Mobility Mass Spectrometry to Monitor Dynamics of IgG4 Fab Arm Exchange and "Bispecific" Monoclonal Antibody Formation. Anal Chem 85:9785-9792. https://doi.org/10.1021/ac402237v

Gissot M, Walker R, Delhaye S, Alayi TD, Huot L, Hot D, Callebaut I, Schaeffer-Reiss C, Van Dorsselaer A, Tomavo S. 2013. Toxoplasma gondii Alba Proteins Are Involved in Translational Control of Gene Expression. J. Mol. Biol. 425:1287-1301.

Walker R, Gissot M, Huot L, Alayi T, Hot D, Marot G, Schaeffer-Reiss C, Van Dorsselaer A, Kim K, Tomavo S. 2013. Toxoplasma transcription factor TgAP2XI-5 regulates the expression of genes involved in parasite virulence and host invasion. J Biol Chem 288:31127-31138. https://doi.org/10.1074/jbc.M113.486589

2012

Beck A, Sanglier-Cianferani S, Van Dorsselaer A. 2012. Biosimilar, Biobetter, and Next Generation Antibody Characterization by Mass Spectrometry. Anal Chem 84:4637-4646. https://doi.org/10.1021/ac3002885

Renouf B, Soret C, Saandi T, Delalande F, Martin E, Vanier M, Duluc I, Gross I, Freund JN, Domon-Dell C. 2012. Cdx2 homeoprotein inhibits non-homologous end joining in colon cancer but not in leukemia cells. Nucleic Acids Res 40:3456-3469. https://doi.org/10.1093/nar/gkr1242
gkr1242 [pii]

Laux-Biehlmann A, Grafe N, Mouheiche J, Stuber D, Welters ID, Delalande F, Poisbeau P, Garnero P, Metz-Boutigue MH, Schneider F, Goumon Y. 2012. Comparison of serum and lithium-heparinate plasma for the accurate measurements of endogenous and exogenous morphine concentrations. Br J Clin Pharmacol 74:381-383. https://doi.org/10.1111/j.1365-2125.2012.04199.x

Cousido-Siah A, Petrova T, Hazemann I, Mitschler A, Ruiz FX, Howard E, Ginell S, Atmanene C, Van Dorsselaer A, Sanglier-Cianferani S, Joachimiak A, Podjarny A. 2012. Crystal packing modifies ligand binding affinity : the case of aldose reductase. Proteins-structure function and bioinfomatics 80:2552-2561. https://doi.org/10.1002/prot.24136

Voinot F, Fischer C, Boeuf A, Schmidt C, Delval-Dubois V, Reichardt F, Liewig N, Chaumande B, Ehret-Sabatier L, Lignot JH, Angel F. 2012. Effects of controlled ingestion of kaolinite (5%) on food intake, gut morphology and in vitro motility in rats. Fundam Clin Pharmacol 26:565-576. https://doi.org/10.1111/j.1472-8206.2011.00978.x

Atmanene C, Petiot-Bécard S, Zeyer D, Van Dorsselaer A, Vivat Hannah V, Sanglier-Cianférani S. 2012. Exploring key parameters to detect subtle ligand-induced protein conformational changes using traveling wave ion mobility mass spectrometry. Anal Chem 84:4703-4710. https://doi.org/10.1021/ac203223h

Lelong C, Chevallet M, Diemer H, Luche S, Van Dorsselaer A, Rabilloud T. 2012. Improved proteomic analysis of nuclear proteins, as exemplified by the comparison of two myeloid cell lines nuclear proteomes. J Proteomics 77:577-602. https://doi.org/10.1016/j.jprot.2012.09.034
S1874-3919(12)00690-2 [pii]

Halter D, Goulhen-Chollet F, Gallien S, Casiot C, Hamelin J, Gilard F, Heintz D, Schaeffer C, Carapito C, Van Dorsselaer A, Tcherkez G, Arsène-Ploetze F, Bertin P. 2012. In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis. ISME J. 2012:1-12. https://doi.org/10.1038/ismej.2011.198

Reichardt F, Chaumande B, Caroline H, Robin J-P, Ehret-Sabatier L, Le Maho Y, Liewigb N, Angelb F, Lignotb J-H. 2012. Kaolinite ingestion facilitates restoration of body energy reserves during refeeding after prolonged fasting. Fundamental & Clinical Pharmacology 26 (2012) 577–588 26:577-588.

Laux A, Delalande F, Mouheiche J, Stuber D, Van Dorsselaer A, Bianchi E, Bezard E, Poisbeau P, Goumon Y. 2012. Localization of endogenous morphine-like compounds in the mouse spinal cord. J. comp. Neurol. 520:1547-1561

Angénieux C, Waharte F, Gidon A, Signorino-Gelo F, Wurtz V, Hojeij R, Proamer F, Gachet C, van Dorsselaer A, Hanau D, Salamero J, De la Salle H. 2012. Lysosomal-Associated Transmembrane Protein 5 (LAPTM5) Is a Molecular Partner of CD1e. PLoS ONE 7 : e42634. https://doi.org/10.1371/journal.pone.0042634

Woldt E, Terrand J, Mlih M, Matz RL, Bruban V, Coudane F, Foppolo S, El Asmar Z, Cholet ME, Ninio E, Bednarczyk A, Thiersé D, Schaeffer-Reiss C, Van Dorsselaer A, Boudier C, Wahli W, Chambon P, Metzger D, Herz J, Boucher P. 2012. The nuclear hormone receptor PPAR gamma counteracts vascular calcification by inhibiting Wnt5a signalling in vascular smooth muscle cells. Nature Commun 3:1077. https://doi.org/DOI: 10.1038/ncomms2087

Vercruysse T, Basta B, Dehaen W, Humbert N, Balzarini J, Debaene F, Sanglier-Cianférani S, Pannecouque C, Mély Y, Daelemans D. 2012. A phenyl-thiadiazolylidene-amine derivative ejects zinc from retroviral nucleocapsid zinc fingers and inactivates HIV virions. Retrovirology 9:95:1-14. https://doi.org/10.1186/1742-4690-9-95.

Heintz D, Gallien S, Compagnon V, Berna A, Suzuki M, Yoshida S, Muranaka T, Van Dorsselaer A, Schaeffer C, Bach TJ, Schaller H. 2012. Phosphoproteome exploration reveals a reformatting of cellular processes in response to low sterol biosynthetic capacity in Arabidopsis. J. Proteome Res. 11:1228−1239. https://doi.org/10.1016/j.chom.2012.03.006

Spagnolo A, Magnin-Robert M, Alayi TD, Cilindre C, Mercier L, Schaeffer-Reiss C, van Dorsselaer A, Clement C, F. F. 2012. Physiological changes in green stems of Vitis vinifera L. cv. Chardonnay in response to esca proper and apoplexy revealed by proteomic and transcriptomic analyses. J. Proteome Res. 11:461-475.

Barthélemy NR, Bednarczyk A, Schaeffer-Reiss C, Jullien D, Van Dorsselaer A, Cavusoglu N. 2012. Proteomic tools for the investigation of human hair structural proteins and evidence of weakness sites on hair keratin coil segments. Anal. Biochem 421:43-55. https://doi.org/10.1016/j.ab.2011.10.011

Cousido-Siah A, Ayoub D, Berberian G, Bollo M, Van Dorsselaer A, Debaene F, DiPolo R, Petrova T, Schulze-Briese C, Olieric V, Esteves A, Mitschler A, Sanglier-Cianferani S, Beauge L, Podjarny A. 2012. Structural and functional studies of ReP1-NCXSQ, a protein regulating the squid nerve Na+/Ca2+ exchanger. Acta Cryst D68:1098–1107.

Christine C, Koubemba M, Shakir S, Clavier S, Ehret-Sabatier L, Saupe F, Orend G, Charbonniere LJ. 2012. Synthesis of an activated phosphonated bifunctional chelate with potential for PET imaging and radiotherapy. Org Biomol Chem 10:9183-9190. https://doi.org/10.1039/c2ob26452h

Sloves P-J, Delhaye S, Mouveaux T, Werkmeister E, Slomianny C, Hovasse A, Alayi TD, Callebaut I, Gaji RY, Schaeffer-Reiss C, Van Dorsselear A, Carruthers VB, Tomavo S. 2012. Toxoplasma Sortilin-like Receptor Regulates Protein Transport and Is Essential for Apical Secretory Organelle Biogenesis and Host Infection. Cell Host & Microbe 11:515–527. https://doi.org/10.1016/j.chom.2012.03.006

Bui The Thuong M, Catala C, Colas C, Schaeffer C, Van Dorsselaer A, Mann A, Wagner A. 2012. Trimethoxyarene as a Highly Ionizable Tag for Reaction Analysis by Atmospheric Pressure Photoionization Mass Spectrometry APPI/MS) : Exploration of Heterocyclic Synthesis. Eur. J. Org. Chem. 2012:85–92.

Patramool S, Choumet V, Surasombatpattana P, Sabatier L, Thomas F, Thongrungkiat S, Rabilloud T, Boulanger N, Biron DG, Misse D. 2012. Update on the proteomics of major arthropod vectors of human and animal pathogens. Proteomics 12:3510-3523. https://doi.org/10.1002/pmic.201200300

Mori M, Schult-Dietrich P, Szafarowicz B, Humbert N, Debaene F, Sanglier-Cianferani S, Dietrich U, Mély Y, Botta M. 2012. Use of virtual screening for discovering antiretroviral compounds interacting with the HIV-1 nucleocapsid protein. Virus Res 169:377-387. https://doi.org/10.1016/j.virusres.2012.05.011

2011

Bruneel O, Volant A, Gallien S, Chaumande B, Casiot C, Carapito C, Bardil A, Morin G, Brown GEJ, Personné CJ, Le Paslier D, Schaeffer C, Van Dorsselaer A, Bertin PN, Elbaz-Poulichet F, Arsène-Ploetze F. 2011. Characterization of the Active Bacterial Community Involved in Natural Attenuation Processes in Arsenic-Rich Creek Sediments. Microb. Ecol. 61:793-810.

Losada S, Sabatier L, Hammann P, Guillier C, Matos C, Bermudez H, Lorenzo MA, Noya O. 2011. A combined proteomic and immunologic approach for the analysis of schistosoma mansoni cercariae and adult worm protein extracts and the detection of one of the vaccine candidates, sm28gst, from a venezuelan parasite isolate. Investigacion Clinica 52:121-139.

Van Dorsselaer A, Carapito C, Delalande F, Schaeffer-Reiss C, Thierse D, Diemer H, McNair DS, Krewski D, Cashman NR. 2011. Detection of Prion Protein in Urine-Derived Injectable Fertility Products by a Targeted Proteomic Approach. PLoS ONE 6:e17815.

Hispard F, de Vaufleury A, Schaeffer C, Scheifler R, Badot PM, Richert L, Martin H. 2011. Differential liver proteome mapping of control and cadmium-fed rats. Ecotoxicol Environ Saf 74:576-583.

Jadid N, Mialoundama AS, Heintz D, Ayoub D, Erhardt M, Mutterer J, Meyer D, Alioua A, Van Dorsselaer A, Rahier A, Camara B, Bouvier F. 2011. Dolicho Phosphate Mannose Synthetase1 Mediates the Biogenesis of Isoprenyl-Linked Glycans and Influences Development, Stress Response, and Ammonium Hypersensitivity in Arabidopsis. Plant Cell 23:1985-2005.

Charron G, Doudnikoff E, Laux A, Berthet A, Porras G, Canron M, Barroso-Chinea P, Li Q, Qin C, Nosten-Bertrand M, Giros B, Delalande F, Van Dorsselaer A, Vital A, Goumon Y, Bezard E. 2011. Endogenous morphine-like compound immunoreactivity increases in parkinsonism. Brain 134:2321-2338.

Rode C, Gallien S, Heintz D, Van Dorsselaer A, Braun H-P, Winkelmann T. 2011. Enolases : storage compounds in seeds ? Evidence from a proteomic comparison of zygotic and somatic embryos 5 of Cyclamen persicum Mill. Plant Mol. Biol. 75:305-319.

Bissé E, Hovasse A, Preisler-Adams S, Epting T, Wagner O, Kögel G, Van Dorsselaer A, Schaeffer-Reiss C. 2011. Hb Riesa or β93 (F9) Cys→Ser, a new electrophoretically silent haemoglobin variant interfering with haemoglobin A1c measurement. J Chromatogr B Analyt Technol Biomed Life Sci. 879:2952-2956.

Borchani L, Sassi A, Shahbazzadeh D, Strub JM, Tounsi-Guetteti H, Boubaker MS, Akbari A, Van Dorsselaer A, El Ayeb M. 2011. Heminecrolysin, the first hemolytic dermonecrotic toxin purified from scorpion venom. Toxicon 58:130-139.

Marchand V, Santerre M, Aigueperse C, Fouillen L, Saliou JM, Van Dorsselaer A, Sanglier-Cianférani S, Branlant C, Motorin Y. 2011. Identification of protein partners of the human immunodeficiency virus 1 tat/rev exon 3 leads to the discovery of a new HIV-1 splicing regulator, protein hnRNP K. RNA Biol. 8:325 - 342.

Laux A, Muller AH, Miehe M, Dirrig-Grosch S, Deloulme JC, Delalande F, Stuber D, Sage D, Van Dorsselaer A, Poisbeau P, Aunis D, Goumon Y. 2011. Mapping of endogenous morphine-like compounds in the adult mouse brain : Evidence of their localization in astrocytes and GABAergic cells. J. Comp. Neurol. 519:2390-2416.

Bertin PN, Heinrich-Salmeron A, Pelletier E, Goulhen-Chollet F, Arsène-Ploetze F, Gallien S, Lauga B, Casiot C, Calteau A, Vallenet D, Bonnefoy V, Bruneel O, Chane-Woon-Ming B, Cleiss-Arnold J, Duran R, Elbaz-Poulichet F, Fonknechten N, Giloteaux L, Halter D, Koechler S, Marchal M, Mornico D, Schaeffer C, A.A. S, Van Dorsselaer A, Weissenbach J, Médigue C, Le Paslier D. 2011. Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics
ISME J. 5:1735-1747.

Chevreux G, Atmanene C, Lopez P, Ouazzani J, Van Dorsselaer A, Badet B, Badet-Denisot MA, Sanglier-Cianférani S. 2011. Monitoring the dynamics of monomer exchange using electrospray mass spectrometry : the case of the dimeric glucosamine-6-phosphate synthase. J. Am. Soc. Mass Spectrom. 22:431-439

Sanglier-Cianferani S, Atmanene C, Vivat Hannah V, Van Dorsselaer A. 2011. Native Electrospray Ionisation Mass Spectrometry for the Characterisation of Protein/Ligand Systems. RSC Biomolecular Sciences No. 22 Biophysical Approaches Determining Ligand Binding to Biomolecular Targets : Detection, Measurement and Modelling
Ed. Alberto Podjarny, Annick Dejaegere and Bruno Kieffer, Royal Society of Chemistry 2011 22:200-225.

Sanglier-Cianférani S, Atmanene C, Vivat Hannah V, Van Dorsselaer A. 2011. Native Electrospray Ionization Mass Spectrometry for the Characterization of Protein/Ligand Systems. Biophysical Approaches Determining Ligand Binding to Biomolecular Targets. Royal Society of Chemistry 200-225.

Olguin-Lama AM, E., Hovasse A, Werkmeister E, Callebaut I, Slomianny C, Delhaye S, Mouveaux T, Schaeffer-Reiss C, Van Dorsselaer A, Tomavo S. 2011. A novel Toxoplasma gondii nuclear factor TgNF3 is a dynamic chromatinassociated component, modulator of nucleolar architecture and parasite virulence. PLoS Pathogens 7:e1001328. https://doi.org/e1001328 DOI : 10.1371/journal.ppat.1001328

Eddabra R, Moussaoui W, Prevost G, Delalande F, Van Dorsselaer A, Meunier O, Scheftel J, Mimouni R. 2011. Occurrence of Vibrio cholerae non-O1 in three wastewater treatment plants in Agadir (Morocco) World Journal of microbiology &Biotechnology 27:1099-1108.

Iehl J, Vartanian M, Holler M, Nierengarten JF, Delavaux-Nicot B, Strub JM, Van Dorsselaer A, Wu Y, Mohanraj J, Yoosaf K, Armarolid N. 2011. Photoinduced electron transfer in a clicked fullerene-porphyrin conjugate. J. Mater. Chem. 21:1562-1573.

Iehl J, Holler M, Nierengarten JF, Yoosaf K, Malicka JM, Armalori N, Strub JM, Van Dorsselaer A, Delavaux-Nicot B. 2011. Photo-induced Energy Transfer in a Th-Symmetrical
Hexakis-adduct of C60 Substituted with
p-Conjugated Oligomers. Aust. J. Chem. 64:153-159.

Boehler C, Gauthier LR, Mortusewicz O, Biard DS, Saliou J-M, Bresson A, Sanglier-Cianferani S, Smith S, Schreiber V, Boussin F, Dantzer F. 2011. Poly(ADP-ribose) polymerase 3 (PARP3), a newcomer in cellular response to DNA damage and mitotic progression. PNAS 108:2783-2788.

Fournier I, Gaucher D, Chich J-F, Bach C, Shooshtarizadeh P, Picaud S, Bourcier T, Speeg-Schatz C, Strub J-M, Van Dorsselaer A, Corti A, Aunis D, Metz-Boutigue M-H. 2011. Presence and natural processing of chromogranins A, B and secretogranin II in patients with diabetic retinopathy. Regul. Pept. 167:118-124.

Catusse, Meinhard J, Job C, Strub JM, Fischer UP, E., Westhoff P, Van Dorsselaer A, Job D. 2011. Proteomics reveals potential biomarkers of seed vigor in sugarbeet. Proteomics 11:1569-1580.

Destouches D, Page N, Hamma-Kourbali Y, Machi V, Chaloin O, Frechault S, Birmpas C, Katsoris P, Beyrath J, Albanese P, Maurer M, Carpentier G, Strub JM, Van Dorsselaer A, Muller S, Bagnard D, Briand JP, Courty J. 2011. A Simple Approach to Cancer Therapy Afforded by Multivalent Pseudopeptides That Target Cell-Surface Nucleoproteins. Cancer Res. 71:3296-3305.

Chilloux J, Soty M, Delalande F, Bertile F, Van Dorsselaer A, Mithieux G, Gautier-Stein A. 2011. Study of post-translational regulation of glucose-6-phosphatase by mutagenesis and mass spectrometry after immunoprecipitation Diabetes & Metabolism 37:A29-A29.

Halter D, Cordi A, Gribaldo S, Gallien S, Goulhen-Chollet F, Heinrich-Salmeron A, Carapito C, Pagnout C, Montaut D, Seby F, Van Dorsselaer A, Schaeffer C, Bertin P, Bauda P, Arsène-Ploetze F. 2011. Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments. Res Microbiol 162:877-887.

Herquel B, Ouararhni K, Khetchoumian K, Ignat M, Teletin M, Mark M, Béchade G, Van Dorsselaer A, Sanglier-Cianférani S, Hamiche A, Cammas F, Davidson I, Losson R. 2011. Transcription cofactors TRIM24, TRIM28, and TRIM33 associate to form regulatory complexes that suppress murine hepatocellular carcinoma. Proc Natl Acad Sci U S A 108:8212-8217.

Fauquenoy S, Hovasse A, Sloves PJ, Morelle W, Tchilabalo-Dilezitoko E, Slomianny C, Werkmeister E, Schaeffer C, Van Dorsselaer A, Tomavo S. 2011. Unusual N-glycan structures are required for trafficking Toxoplasma gondii GAP50 to the inner membrane complex and regulate host cell entry through parasite motility. Mol. Cell. Proteomics 10:M111.008953.

2010

Maenner S, Blaud M, Fouillen L, Savoye A, Marchand V, Dubois A, Sanglier-Cianférani S, Van Dorsselaer A, Clerc P, Avner P, Visvikis A, Branlant C. 2010. 2D structure of the A region of Xist RNA and its implication for PRC2 association. PLoS Biol. 8:e1000276.

Charlet A, Muller AH, Laux A, Kemmel V, Schweitzer A, Deloulme JC, Stuber D, Delalande F, Bianchi E, Van Dorsselaer A, Aunis D, Andrieux A, Poisbeau P, Goumon Y. 2010. Abnormal nociception and opiate sensitivity of STOP null mice exhibiting elevated levels of the endogenous alkaloid morphine. Mol. Pain 6:96.

Fouillen L, Abdulrahman W, Moras D, Van Dorsselaer A, Poterszman A, Sanglier-Cianférani S. 2010. Analysis of recombinant phosphoprotein complexes with complementary mass spectrometry approaches. Anal. Biochem. 407:34-43.

Janin-Bussat M-C, Wagner-Rousset E, Klinguer-Hamour C, Corvaia N, Van Dorsselaer A, Beck A. 2010. Antibody Glycans Characterization. Antibody Engineering. Springer Protocols Chap 40:635-656.

Akaddar A, Doderer-Lang C, Marzahn MR, Delalande F, Mousli M, Helle K, Van Dorsselaer A, Aunis D, Dunn BM, Metz-Boutigue M-H, Candolfi E. 2010. Catestatin, an endogenous Chromogranin A–derived peptide, inhibits in vitro growth of Plasmodium falciparum. Cell. Mol. Life Sci. 67:1005-1015.

Ossareh-Nazari B, Bonizec M, Cohen M, Dokudovskaya S, Delalande F, Schaeffer C, Van Dorsselaer A, Dargemont C. 2010. Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy. EMBO Rep. 11:548-554.

Atmanene C, Chaix D, Bessin Y, Declerck N, Van Dorsselaer A, Sanglier-Cianferani S. 2010. Combination of Noncovalent Mass Spectrometry and Traveling Wave Ion Mobility Spectrometry Reveals Sugar-Induced Conformational Changes of CggR / DNA Complex. Anal. Chem. 82:3597-3605.

Trabalon M, Carapito C, Voinot F, Martrette J, Van Dorsselaer A, Gilbert C, Bertile F. 2010. Differences in Brachypelma albopilosa (theraphosidae) hemolymph proteome between subadult and adult females. J. Exp. Zool. A Ecol. Genet. Physiol. 313:651-659.

Glattard E, Welters ID, Lavaux T, Muller AH, Laux A, Zhang D, Schmidt AR, Delalande F, Laventie BJ, Dirrig-Grosch S, Colin DA, Van Dorsselaer A, Aunis D, Metz-Boutigue MH, Schneider F, Goumon Y. 2010. Endogenous morphine levels are increased in sepsis : a partial implication of neutrophils. PLoS ONE 5:e8791.

Zimmermann M, Atmanene C, Xu Q, Fouillen L, Van Dorsselaer AB, D., Marsol C, Hibert M, Sanglier-Cianferani S, Pigault C, McNamara LK, Watterson DM, Haiech J, Kilhoffer MC. 2010. Homodimerization of the death-associated protein kinase catalytic domain : development of a new small molecule fluorescent reporter. PLoS ONE 5:e14120.

Samaha H, Delorme V, Pontvianne F, Cooke R, Delalande F, Van Dorsselaer A, Echeverria M, Saez Vasquez J. 2010. Identification of protein factors and U3 snoRNAs from a B. oleracea RNP complex involved in processing of pre-rRNA. Plant Journal 61:383-398.

Vitale N, Thierse D, Bader M-F. 2010. Melittin promotes exocytosis in neuroendocrine cells through the activation of phospholipase A(2). Regulatory Peptides 2010:111-116.

Vivat Hannah V, Atmanene C, Zeyer D, Van Dorsselaer A, Sanglier-Cianférani S. 2010. Native MS : an ‘ESI’ way to support structure- and fragment-based drug discovery. Future Med. Chem. 2:35-50.

Budin G, Moune-Dimala M, Leriche G, Saliou J, Papillon J, Sanglier-Cianférani S, Van Dorsselaer A, Lamour V, Brino L, Wagner A. 2010. Nondenaturing chemical proteomics for protein complex isolation and identification. Chembiochem 11:2359-2361.

Chaix D, Ferguson M, Atmanene C, Van Dorsselaer A, Sanglier-Cianferani S, Royer C, Declerck N. 2010. Physical basis of the inducer-dependent cooperativity of the CggR repressor/DNA complex. Nucleic Acids Res. 38:5944-5957.

Fuhrs H, Behrens C, Gallien S, Heintz D, Van Dorsselaer A, Braun H-P, Horst WJ. 2010. Physiological and proteomic characterization of manganese sensitivity and tolerance in rice (Oryza sativa) in comparison with barley (Hordeum vulgare). Ann. Bot. 105:1129-1140.

Eckert K, Saliou J, Monlezun L, Vigouroux A, Atmane N, Caillat C, Quevillon-Chéruel S, Madiona K, Niçaise M, Lazereg S, Van Dorsselaer A, Sanglier-Cianférani S, Meyer P, Moréra S. 2010. The Pih1-Tah1 cochaperone complex inhibits Hsp90 molecular chaperone ATPase activity. J. Biol. Chem. 285:31304-31312.

Mastrangeli R, Carapito C, Schaeffer-Reiss C, Thierse D, Diemer H, Sanvito R, Van Dorsselaer A. 2010. Prion protein identified in urinary gonadotrophin preparation. Reproductive Medecine and Endocrinology 7:277.

Babujee L, Wurtz V, Ma C, Lueder F, Soni P, Van Dorsselaer A, Reumann S. 2010. The proteome map of spinach leaf peroxisomes indicates partial compartmentalization of phylloquinone (vitamin K1) biosynthesis in plant peroxisomes. J. Exp. Bot. 61:1441-1453.

Revollon S, Strub J, Fitchette A, Wiss L, Gomord V, Van Dorsselaer A, Brault V. 2010. A reinvestigation provides no evidence for sugar residues on structural proteins of poleroviruses and argues against a role for glycosylation of virus structural proteins in aphid transmission. Virology 402:303-314.

Castro A, Bednarczyk A, Schaeffer-Reiss C, Rodríguez-García M, van Dorsselaer A, de Dios Alché J. 2010. Screening of Ole e 1 polymorphism among olive cultivars by peptide mapping and N-glycopeptide analysis. Proteomics 10:953–962.

Janin-Bussat M-C, Strub J-M, Wagner-Rousset E, Colas O, Klinguer-Hamour C, Corvaia N, . VD, Beck A. 2010. Structural Characterization of Antibodies by Mass Spectrometry. Antibody Engineering. Springer Protocols Chap 39:613-634.

Gharbi-Ayachi A, Labbe J-C, Burgess A, Vigneron S, Strub J-M, Brioudes E, Van-Dorsselaer A, Castro A, Lorca T. 2010. The Substrate of Greatwall Kinase, Arpp19, Controls Mitosis by Inhibiting Protein Phosphatase 2A. Science 330:1673-1677.

Kuhn Y, Sanchez C, Ayoub D, Saridaki T, van Dorsselaer A, Lanzer M. 2010. Trafficking of the Phosphoprotein PfCRT to the Digestive Vacuolar Membrane in Plasmodium falciparum. Traffic 11:236-249.